7f9e0d7817167dfd2da6b9fe0ce3f4a6e366ff3d jnavarr5 Tue May 11 11:27:31 2021 -0700 Announcing the Vaccines track for wuhCor1, refs #27312 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 9bac6e0..6b1ec91 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -39,30 +39,62 @@ </div> <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> +<a name="051121"></a> +<h2>May. 11, 2021 Vaccines track available for the SARS-CoV-2 Genome Browser</h2> +<p> +We are happy to announce the release of the +<a href="../cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=vaccines">Vaccines</a> track for the UCSC +SARS-CoV-2 Genome Browser. This track shows the alignment of three different mRNA vaccine sequences +to the coronavirus genome: +</p> +<ol> + <li> + The BioNTech/Pfizer BNT-162b2 sequence as published by the World Health Organization (WHO)</li> + <li> + The reconstructed BioNTech/Pfizer BNT-162b2 RNA as sequenced by the + <a href="https://firelab.sites.stanford.edu/" target="_blank">Andrew Fire lab</a>, Stanford + University School of Medicine</li> + <li> + The Moderna mRNA-1273 sequence as sequenced by the + <a href="https://firelab.sites.stanford.edu/" target="_blank">Andrew Fire lab</a>, Stanford + University School of Medicine</li> +</ol> +<p> +The protein encoded by the three sequences has two AA substitutions compared to the SARS-CoV-2 S +glycoprotein. Variations: S:K986P and S:V987P in the vaccine sequence. See also: +<a href="https://cen.acs.org/pharmaceuticals/vaccines/tiny-tweak-behind-COVID-19/98/i38" +target="_blank">The tiny tweak behind COVID-19 vaccines</a>. More information about this track can +be found on the <a href="../cgi-bin/hgTrackUi?db=wuhCor1&c=NC_045512v2&g=vaccines">description +page</a>. +<p> +We want to thank the <a href="https://twitter.com/Fire__Lab" target="_blank">Andrew Fire lab</a>, +Stanford University School of Medicine for providing the sequencing data of these vaccines. We also +want to thank Hiram Clawson and Jairo Navarro for the creation and release of this track.</p> + <a name="050421"></a> <h2>May. 04, 2021 New Genome Browser: Rat, rn7 (<em>Rattus norvegicus</em>)</h2> <p> A genome browser is now available for the <em>Rattus norvegicus</em> assembly released in Nov. 2020 by the <a href="https://www.darwintreeoflife.org/" target="_blank"> Darwin Tree of Life Project</a> at the <a href="https://www.sanger.ac.uk/" target="_blank"> Wellcome Sanger Institute</a> (mRatBN7.2). <h3>About the assembly:</h3> <ul> <li><b>UCSC Genome Browser assembly ID:</b> <a href="../../cgi-bin/hgGateway?db=rn7" target="_blank">rn7</a></li> <li><b>Sequencing/Assembly provider ID:</b> <a href="https://www.sanger.ac.uk/" target="_blank">Wellcome Sanger Institute</a></li> <li><b>Assembly date:</b> Nov. 2020</li> <li><B>Accession ID:</B> GCF_015227675.2</li> <li><B>NCBI Genome ID:</B> <A HREF='https://www.ncbi.nlm.nih.gov/genome/73'