9c2c393cc048d73c20ef64cd54dde1ad559f1135 gperez2 Wed Jun 9 10:51:14 2021 -0700 Adding a data access section to the refSeqFuncElems track, refs #27662 diff --git src/hg/makeDb/trackDb/refSeqFuncElems.html src/hg/makeDb/trackDb/refSeqFuncElems.html index 3895e73..c4e0a40 100644 --- src/hg/makeDb/trackDb/refSeqFuncElems.html +++ src/hg/makeDb/trackDb/refSeqFuncElems.html @@ -41,30 +41,41 @@ NCBI manually curated features in accordance with International Nucleotide Sequence Database Collaboration (INSDC) standards. Features that are supported by direct experimental evidence include at least one experiment qualifier with an evidence code (ECO ID) from the Evidence and Conclusion Ontology, and at least one citation from PubMed. Currently 971 distinct PubMed citations are included in this track. </p> <h2>Contact</h2> <p> This track was made with assistance from <a href="mailto:murphyte@ncbi. nlm. nih. gov" target="_blank">Terence Murphy</a> at NCBI.</p> +<h2>Data access</h2> +<p> +The raw data can be explored interactively with the <a href="/cgi-bin/hgTables" +target="_blank">Table Browser</a>, or the <a href="/cgi-bin/hgIntegrator" +target="_blank">Data Integrator</a>. For automated analysis, the data may be +queried from our <a href="../goldenPath/help/api.html" target="_blank">REST API</a>, +and the genome annotations are stored in files that can be downloaded from our +<a href="https://hgdownload.soe.ucsc.edu/gbdb/hg38/ncbiRefSeq/" +target="_blank">download server</a>, with more information available on +<a target="_blank" href="http://genome.ucsc.edu/blog/tag/mysql/">our blog</a>.</p> + <h2>New Version Available</h2> <p> Several new enhancements to the RefSeq Functional Elements dataset are available as a Public Hub. The hub can be found <a href="/cgi-bin/hgHubConnect?hubSearchTerms=RefSeqFE">on the Public Hub page</a>. The track hub was prepared by Dr. Catherine M. Farrell, NCBI/NLM/NIH with further insights discussed <a href="https://ncbiinsights.ncbi.nlm.nih.gov/2020/08/04/new-interaction-data-downloads-track-hub-refseq-functional-elements/" target="_blank">in a related NCBI blog post</a>.</p> <h2>References</h2> <p> Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM <em>et al</em>. <a href="https://academic.oup.com/nar/article/42/D1/D756/1051112/RefSeq-an-update-on-mammalian- reference-sequences" target="_blank">RefSeq: an update on mammalian reference sequences</a>. <em>Nucleic Acids Res</em>. 2014 Jan;42(Database issue):D756-63.