a2164e2ddb4e25ff50eec753a99e77d2fc58bd03 hiram Wed Jun 9 11:44:17 2021 -0700 convert to dynamic blat server refs #27553 diff --git src/hg/makeDb/doc/mouseStrains/mouseStrains.genomes.txt src/hg/makeDb/doc/mouseStrains/mouseStrains.genomes.txt index cd9f7e9..243f3a9 100644 --- src/hg/makeDb/doc/mouseStrains/mouseStrains.genomes.txt +++ src/hg/makeDb/doc/mouseStrains/mouseStrains.genomes.txt @@ -1,197 +1,213 @@ genome mm10 trackDb mm10/mm10.trackDb.txt genome rn6 trackDb rn6/rn6.trackDb.txt genome 129S1_SvImJ description 26 Apr 2016/129S1_SvImJ_v1 trackDb GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624185.1_129S1_SvImJ_v1/GCA_001624185.1_129S1_SvImJ_v1.2bit organism house mouse -transBlat blat1a.soe.ucsc.edu 17864 -blat blat1a.soe.ucsc.edu 17865 +blat dynablat-01 4040 dynamic GCA/001/624/185/GCA_001624185.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/185/GCA_001624185.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/185/GCA_001624185.1 scientificName . defaultPos chr1:100277822-102277822 htmlPath GCA_001624185.1_129S1_SvImJ_v1/html/GCA_001624185.1_129S1_SvImJ_v1.description.html genome WSB_EiJ description 26 Apr 2016/WSB_EiJ_v1 trackDb GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624835.1_WSB_EiJ_v1/GCA_001624835.1_WSB_EiJ_v1.2bit -transBlat blat1c.soe.ucsc.edu 17880 -blat blat1c.soe.ucsc.edu 17881 organism western European house mouse +blat dynablat-01 4040 dynamic GCA/001/624/835/GCA_001624835.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/835/GCA_001624835.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/835/GCA_001624835.1 scientificName . defaultPos chr1:99055726-101055726 htmlPath GCA_001624835.1_WSB_EiJ_v1/html/GCA_001624835.1_WSB_EiJ_v1.description.html genome SPRET_EiJ description 26 Apr 2016/SPRET_EiJ_v1 trackDb GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624865.1_SPRET_EiJ_v1/GCA_001624865.1_SPRET_EiJ_v1.2bit -transBlat blat1c.soe.ucsc.edu 17882 -blat blat1c.soe.ucsc.edu 17883 organism western wild mouse +blat dynablat-01 4040 dynamic GCA/001/624/865/GCA_001624865.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/865/GCA_001624865.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/865/GCA_001624865.1 scientificName . defaultPos chr1:98423133-100423133 htmlPath GCA_001624865.1_SPRET_EiJ_v1/html/GCA_001624865.1_SPRET_EiJ_v1.description.html genome AKR_J description 26 Apr 2016/AKR_J_v1 trackDb GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624295.1_AKR_J_v1/GCA_001624295.1_AKR_J_v1.2bit -transBlat blat1a.soe.ucsc.edu 17868 -blat blat1a.soe.ucsc.edu 17869 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/295/GCA_001624295.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/295/GCA_001624295.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/295/GCA_001624295.1 scientificName . defaultPos chr1:98994563-100994563 htmlPath GCA_001624295.1_AKR_J_v1/html/GCA_001624295.1_AKR_J_v1.description.html genome DBA_2J description 26 Apr 2016/DBA_2J_v1 trackDb GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624505.1_DBA_2J_v1/GCA_001624505.1_DBA_2J_v1.2bit -transBlat blat1b.soe.ucsc.edu 17866 -blat blat1b.soe.ucsc.edu 17867 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/505/GCA_001624505.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/505/GCA_001624505.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/505/GCA_001624505.1 scientificName . defaultPos chr1:95464054-97464054 htmlPath GCA_001624505.1_DBA_2J_v1/html/GCA_001624505.1_DBA_2J_v1.description.html genome CBA_J description 26 Apr 2016/CBA_J_v1 trackDb GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624475.1_CBA_J_v1/GCA_001624475.1_CBA_J_v1.2bit -transBlat blat1b.soe.ucsc.edu 17864 -blat blat1b.soe.ucsc.edu 17865 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/475/GCA_001624475.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/475/GCA_001624475.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/475/GCA_001624475.1 scientificName . defaultPos chr1:107316755-109316755 htmlPath GCA_001624475.1_CBA_J_v1/html/GCA_001624475.1_CBA_J_v1.description.html genome A_J description 26 Apr 2016/A_J_v1 trackDb GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624215.1_A_J_v1/GCA_001624215.1_A_J_v1.2bit -transBlat blat1a.soe.ucsc.edu 17866 -blat blat1a.soe.ucsc.edu 17867 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/215/GCA_001624215.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/215/GCA_001624215.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/215/GCA_001624215.1 scientificName . defaultPos chr1:96101805-98101805 htmlPath GCA_001624215.1_A_J_v1/html/GCA_001624215.1_A_J_v1.description.html genome C57BL_6NJ description 09 May 2016/C57BL_6NJ_v1 trackDb GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001632555.1_C57BL_6NJ_v1/GCA_001632555.1_C57BL_6NJ_v1.2bit -transBlat blat1d.soe.ucsc.edu 17872 -blat blat1d.soe.ucsc.edu 17873 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/632/555/GCA_001632555.1 +transBlat dynablat-01 4040 dynamic GCA/001/632/555/GCA_001632555.1 +isPcr dynablat-01 4040 dynamic GCA/001/632/555/GCA_001632555.1 scientificName . defaultPos chr1:103457502-105457502 htmlPath GCA_001632555.1_C57BL_6NJ_v1/html/GCA_001632555.1_C57BL_6NJ_v1.description.html genome CAST_EiJ description 26 Apr 2016/CAST_EiJ_v1 trackDb GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624445.1_CAST_EiJ_v1/GCA_001624445.1_CAST_EiJ_v1.2bit -transBlat blat1a.soe.ucsc.edu 17870 -blat blat1a.soe.ucsc.edu 17871 organism southeastern Asian house mouse +blat dynablat-01 4040 dynamic GCA/001/624/445/GCA_001624445.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/445/GCA_001624445.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/445/GCA_001624445.1 scientificName . defaultPos chr1:99212284-101212284 htmlPath GCA_001624445.1_CAST_EiJ_v1/html/GCA_001624445.1_CAST_EiJ_v1.description.html genome PWK_PhJ description 26 Apr 2016/PWK_PhJ_v1 trackDb GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624775.1_PWK_PhJ_v1/GCA_001624775.1_PWK_PhJ_v1.2bit -transBlat blat1c.soe.ucsc.edu 17878 -blat blat1c.soe.ucsc.edu 17879 organism eastern European house mouse +blat dynablat-01 4040 dynamic GCA/001/624/775/GCA_001624775.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/775/GCA_001624775.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/775/GCA_001624775.1 scientificName . defaultPos chr1:95105131-97105131 htmlPath GCA_001624775.1_PWK_PhJ_v1/html/GCA_001624775.1_PWK_PhJ_v1.description.html genome LP_J description 09 May 2016/LP_J_v1 trackDb GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.trackDb.txt groups groups.txt twoBitPath GCA_001632615.1_LP_J_v1/GCA_001632615.1_LP_J_v1.2bit -transBlat blat1d.soe.ucsc.edu 17876 -blat blat1d.soe.ucsc.edu 17877 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/632/615/GCA_001632615.1 +transBlat dynablat-01 4040 dynamic GCA/001/632/615/GCA_001632615.1 +isPcr dynablat-01 4040 dynamic GCA/001/632/615/GCA_001632615.1 scientificName . defaultPos chr1:100831781-102831781 htmlPath GCA_001632615.1_LP_J_v1/html/GCA_001632615.1_LP_J_v1.description.html genome C3H_HeJ description 09 May 2016/C3H_HeJ_v1 trackDb GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001632575.1_C3H_HeJ_v1/GCA_001632575.1_C3H_HeJ_v1.2bit -transBlat blat1d.soe.ucsc.edu 17874 -blat blat1d.soe.ucsc.edu 17875 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/632/575/GCA_001632575.1 +transBlat dynablat-01 4040 dynamic GCA/001/632/575/GCA_001632575.1 +isPcr dynablat-01 4040 dynamic GCA/001/632/575/GCA_001632575.1 scientificName . defaultPos chr1:99440325-101440325 htmlPath GCA_001632575.1_C3H_HeJ_v1/html/GCA_001632575.1_C3H_HeJ_v1.description.html genome NZO_HlLtJ description 26 Apr 2016/NZO_HlLtJ_v1 trackDb GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624745.1_NZO_HlLtJ_v1/GCA_001624745.1_NZO_HlLtJ_v1.2bit -transBlat blat1c.soe.ucsc.edu 17876 -blat blat1c.soe.ucsc.edu 17877 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/745/GCA_001624745.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/745/GCA_001624745.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/745/GCA_001624745.1 scientificName . defaultPos chr1:98901052-100901052 htmlPath GCA_001624745.1_NZO_HlLtJ_v1/html/GCA_001624745.1_NZO_HlLtJ_v1.description.html genome NOD_ShiLtJ description 26 Apr 2016/NOD_ShiLtJ_v1 trackDb GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624675.1_NOD_ShiLtJ_v1/GCA_001624675.1_NOD_ShiLtJ_v1.2bit -transBlat blat1b.soe.ucsc.edu 17870 -blat blat1b.soe.ucsc.edu 17871 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/675/GCA_001624675.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/675/GCA_001624675.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/675/GCA_001624675.1 scientificName . defaultPos chr1:110666897-112666897 htmlPath GCA_001624675.1_NOD_ShiLtJ_v1/html/GCA_001624675.1_NOD_ShiLtJ_v1.description.html genome FVB_NJ description 26 Apr 2016/FVB_NJ_v1 trackDb GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001624535.1_FVB_NJ_v1/GCA_001624535.1_FVB_NJ_v1.2bit -transBlat blat1b.soe.ucsc.edu 17868 -blat blat1b.soe.ucsc.edu 17869 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/624/535/GCA_001624535.1 +transBlat dynablat-01 4040 dynamic GCA/001/624/535/GCA_001624535.1 +isPcr dynablat-01 4040 dynamic GCA/001/624/535/GCA_001624535.1 scientificName . defaultPos chr1:94501997-96501997 htmlPath GCA_001624535.1_FVB_NJ_v1/html/GCA_001624535.1_FVB_NJ_v1.description.html genome BALB_cJ description 09 May 2016/BALB_cJ_v1 trackDb GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.trackDb.txt groups groups.txt twoBitPath GCA_001632525.1_BALB_cJ_v1/GCA_001632525.1_BALB_cJ_v1.2bit -transBlat blat1d.soe.ucsc.edu 17870 -blat blat1d.soe.ucsc.edu 17871 organism house mouse +blat dynablat-01 4040 dynamic GCA/001/632/525/GCA_001632525.1 +transBlat dynablat-01 4040 dynamic GCA/001/632/525/GCA_001632525.1 +isPcr dynablat-01 4040 dynamic GCA/001/632/525/GCA_001632525.1 scientificName . defaultPos chr1:96454111-98454111 htmlPath GCA_001632525.1_BALB_cJ_v1/html/GCA_001632525.1_BALB_cJ_v1.description.html