44b8755102648a288c1db8d9008b99ef88bbbaae hiram Fri Jun 11 12:10:27 2021 -0700 adding dynamic blat service refs #24354 diff --git src/hg/makeDb/doc/globalReference/genomes.txt src/hg/makeDb/doc/globalReference/genomes.txt index da870f4..ea959d4 100644 --- src/hg/makeDb/doc/globalReference/genomes.txt +++ src/hg/makeDb/doc/globalReference/genomes.txt @@ -1,110 +1,140 @@ genome GCA_003601015.1_HG03807_prelim_1.0 trackDb genomes/GCA_003601015.1_HG03807_prelim_1.0/GCA_003601015.1_HG03807_prelim_1.0.trackDb.txt groups groups.txt description Bengali, Bangladesh twoBitPath genomes/GCA_003601015.1_HG03807_prelim_1.0/GCA_003601015.1_HG03807_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/003/601/015/GCA_003601015.1 +transBlat dynablat-01 4040 dynamic GCA/003/601/015/GCA_003601015.1 +isPcr dynablat-01 4040 dynamic GCA/003/601/015/GCA_001601015.1 defaultPos RAIB01000807v1:16862869-16872869 orderKey 1 scientificName Homo sapiens htmlPath genomes/GCA_003601015.1_HG03807_prelim_1.0/html/GCA_003601015.1_HG03807_prelim_1.0.description.html genome GCA_003574075.1_HG02818_prelim_1.0 trackDb genomes/GCA_003574075.1_HG02818_prelim_1.0/GCA_003574075.1_HG02818_prelim_1.0.trackDb.txt groups groups.txt description Gambia, Gambia twoBitPath genomes/GCA_003574075.1_HG02818_prelim_1.0/GCA_003574075.1_HG02818_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/003/574/075/GCA_003574075.1 +transBlat dynablat-01 4040 dynamic GCA/003/574/075/GCA_003574075.1 +isPcr dynablat-01 4040 dynamic GCA/003/574/075/GCA_003574075.1 defaultPos QYBF01000001v1:27043087-27053087 orderKey 3 scientificName Homo sapiens htmlPath genomes/GCA_003574075.1_HG02818_prelim_1.0/html/GCA_003574075.1_HG02818_prelim_1.0.description.html genome GCA_003086635.1_HG03486_prelim_1.0 trackDb genomes/GCA_003086635.1_HG03486_prelim_1.0/GCA_003086635.1_HG03486_prelim_1.0.trackDb.txt groups groups.txt description Mende, Sierra Leone twoBitPath genomes/GCA_003086635.1_HG03486_prelim_1.0/GCA_003086635.1_HG03486_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/003/086/635/GCA_003086635.1 +transBlat dynablat-01 4040 dynamic GCA/003/086/635/GCA_003086635.1 +isPcr dynablat-01 4040 dynamic GCA/003/086/635/GCA_003086635.1 defaultPos QEMZ01000892v1:7666092-7676092 orderKey 5 scientificName Homo sapiens htmlPath genomes/GCA_003086635.1_HG03486_prelim_1.0/html/GCA_003086635.1_HG03486_prelim_1.0.description.html genome GCA_003070785.1_HG02059_prelim_1.0 trackDb genomes/GCA_003070785.1_HG02059_prelim_1.0/GCA_003070785.1_HG02059_prelim_1.0.trackDb.txt groups groups.txt description Vietnamese, Vietnam twoBitPath genomes/GCA_003070785.1_HG02059_prelim_1.0/GCA_003070785.1_HG02059_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/003/070/785/GCA_003070785.1 +transBlat dynablat-01 4040 dynamic GCA/003/070/785/GCA_003070785.1 +isPcr dynablat-01 4040 dynamic GCA/003/070/785/GCA_003070785.1 defaultPos QDDK01000003v1:25272283-25282283 orderKey 7 scientificName Homo sapiens htmlPath genomes/GCA_003070785.1_HG02059_prelim_1.0/html/GCA_003070785.1_HG02059_prelim_1.0.description.html genome GCA_002872155.1_NA19434_prelim_1.0 trackDb genomes/GCA_002872155.1_NA19434_prelim_1.0/GCA_002872155.1_NA19434_prelim_1.0.trackDb.txt groups groups.txt description Luhya, Kenya twoBitPath genomes/GCA_002872155.1_NA19434_prelim_1.0/GCA_002872155.1_NA19434_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/002/872/155/GCA_002872155.1 +transBlat dynablat-01 4040 dynamic GCA/002/872/155/GCA_002872155.1 +isPcr dynablat-01 4040 dynamic GCA/002/872/155/GCA_002872155.1 defaultPos POCD01000001v1:30671592-30681592 orderKey 9 scientificName Homo sapiens htmlPath genomes/GCA_002872155.1_NA19434_prelim_1.0/html/GCA_002872155.1_NA19434_prelim_1.0.description.html genome GCA_002209525.2_HG01352_prelim_2.1 trackDb genomes/GCA_002209525.2_HG01352_prelim_2.1/GCA_002209525.2_HG01352_prelim_2.1.trackDb.txt groups groups.txt description Columbian, Colombia twoBitPath genomes/GCA_002209525.2_HG01352_prelim_2.1/GCA_002209525.2_HG01352_prelim_2.1.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/002/209/525/GCA_002209525.2 +transBlat dynablat-01 4040 dynamic GCA/002/209/525/GCA_002209525.2 +isPcr dynablat-01 4040 dynamic GCA/002/209/525/GCA_002209525.2 defaultPos NKHJ01000001v1:21647487-21657487 orderKey 11 scientificName Homo sapiens htmlPath genomes/GCA_002209525.2_HG01352_prelim_2.1/html/GCA_002209525.2_HG01352_prelim_2.1.description.html genome GCA_002208065.1_HG00733_prelim_1.0 trackDb genomes/GCA_002208065.1_HG00733_prelim_1.0/GCA_002208065.1_HG00733_prelim_1.0.trackDb.txt groups groups.txt description Puerto Rican, Puerto Rico twoBitPath genomes/GCA_002208065.1_HG00733_prelim_1.0/GCA_002208065.1_HG00733_prelim_1.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/002/208/065/GCA_002208065.1 +transBlat dynablat-01 4040 dynamic GCA/002/208/065/GCA_002208065.1 +isPcr dynablat-01 4040 dynamic GCA/002/208/065/GCA_002208065.1 defaultPos NJRJ01000001v1:25191877-25201877 orderKey 13 scientificName Homo sapiens htmlPath genomes/GCA_002208065.1_HG00733_prelim_1.0/html/GCA_002208065.1_HG00733_prelim_1.0.description.html genome GCA_002180035.3_HG00514_prelim_3.0 trackDb genomes/GCA_002180035.3_HG00514_prelim_3.0/GCA_002180035.3_HG00514_prelim_3.0.trackDb.txt groups groups.txt description Southern Han Chinese, China twoBitPath genomes/GCA_002180035.3_HG00514_prelim_3.0/GCA_002180035.3_HG00514_prelim_3.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/002/180/035/GCA_002180035.3 +transBlat dynablat-01 4040 dynamic GCA/002/180/035/GCA_002180035.3 +isPcr dynablat-01 4040 dynamic GCA/002/180/035/GCA_002180035.3 defaultPos chr1:83008419-83018419 orderKey 15 scientificName Homo sapiens htmlPath genomes/GCA_002180035.3_HG00514_prelim_3.0/html/GCA_002180035.3_HG00514_prelim_3.0.description.html genome GCA_002077035.3_NA12878_prelim_3.0 trackDb genomes/GCA_002077035.3_NA12878_prelim_3.0/GCA_002077035.3_NA12878_prelim_3.0.trackDb.txt groups groups.txt description Utah/Mormon, USA twoBitPath genomes/GCA_002077035.3_NA12878_prelim_3.0/GCA_002077035.3_NA12878_prelim_3.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/002/077/035/GCA_002077035.3 +transBlat dynablat-01 4040 dynamic GCA/002/077/035/GCA_002077035.3 +isPcr dynablat-01 4040 dynamic GCA/002/077/035/GCA_002077035.3 defaultPos chr1:83093578-83103578 orderKey 17 scientificName Homo sapiens htmlPath genomes/GCA_002077035.3_NA12878_prelim_3.0/html/GCA_002077035.3_NA12878_prelim_3.0.description.html genome GCA_001524155.4_NA19240_prelim_3.0 trackDb genomes/GCA_001524155.4_NA19240_prelim_3.0/GCA_001524155.4_NA19240_prelim_3.0.trackDb.txt groups groups.txt description Yoruban, Nigeria twoBitPath genomes/GCA_001524155.4_NA19240_prelim_3.0/GCA_001524155.4_NA19240_prelim_3.0.2bit organism Homo sapiens +blat dynablat-01 4040 dynamic GCA/001/524/155/GCA_001524155.4 +transBlat dynablat-01 4040 dynamic GCA/001/524/155/GCA_001524155.4 +isPcr dynablat-01 4040 dynamic GCA/001/524/155/GCA_001524155.4 defaultPos chr1:82995534-83005534 orderKey 19 scientificName Homo sapiens htmlPath genomes/GCA_001524155.4_NA19240_prelim_3.0/html/GCA_001524155.4_NA19240_prelim_3.0.description.html