cc3e7eaf76475a948b97f4986a45e8e1c8f5077f hiram Fri Jun 11 12:08:25 2021 -0700 initial genomes.txt before dynamic blat server addition refs #24354 diff --git src/hg/makeDb/doc/globalReference/genomes.txt src/hg/makeDb/doc/globalReference/genomes.txt new file mode 100644 index 0000000..da870f4 --- /dev/null +++ src/hg/makeDb/doc/globalReference/genomes.txt @@ -0,0 +1,110 @@ +genome GCA_003601015.1_HG03807_prelim_1.0 +trackDb genomes/GCA_003601015.1_HG03807_prelim_1.0/GCA_003601015.1_HG03807_prelim_1.0.trackDb.txt +groups groups.txt +description Bengali, Bangladesh +twoBitPath genomes/GCA_003601015.1_HG03807_prelim_1.0/GCA_003601015.1_HG03807_prelim_1.0.2bit +organism Homo sapiens +defaultPos RAIB01000807v1:16862869-16872869 +orderKey 1 +scientificName Homo sapiens +htmlPath genomes/GCA_003601015.1_HG03807_prelim_1.0/html/GCA_003601015.1_HG03807_prelim_1.0.description.html + +genome GCA_003574075.1_HG02818_prelim_1.0 +trackDb genomes/GCA_003574075.1_HG02818_prelim_1.0/GCA_003574075.1_HG02818_prelim_1.0.trackDb.txt +groups groups.txt +description Gambia, Gambia +twoBitPath genomes/GCA_003574075.1_HG02818_prelim_1.0/GCA_003574075.1_HG02818_prelim_1.0.2bit +organism Homo sapiens +defaultPos QYBF01000001v1:27043087-27053087 +orderKey 3 +scientificName Homo sapiens +htmlPath genomes/GCA_003574075.1_HG02818_prelim_1.0/html/GCA_003574075.1_HG02818_prelim_1.0.description.html + +genome GCA_003086635.1_HG03486_prelim_1.0 +trackDb genomes/GCA_003086635.1_HG03486_prelim_1.0/GCA_003086635.1_HG03486_prelim_1.0.trackDb.txt +groups groups.txt +description Mende, Sierra Leone +twoBitPath genomes/GCA_003086635.1_HG03486_prelim_1.0/GCA_003086635.1_HG03486_prelim_1.0.2bit +organism Homo sapiens +defaultPos QEMZ01000892v1:7666092-7676092 +orderKey 5 +scientificName Homo sapiens +htmlPath genomes/GCA_003086635.1_HG03486_prelim_1.0/html/GCA_003086635.1_HG03486_prelim_1.0.description.html + +genome GCA_003070785.1_HG02059_prelim_1.0 +trackDb genomes/GCA_003070785.1_HG02059_prelim_1.0/GCA_003070785.1_HG02059_prelim_1.0.trackDb.txt +groups groups.txt +description Vietnamese, Vietnam +twoBitPath genomes/GCA_003070785.1_HG02059_prelim_1.0/GCA_003070785.1_HG02059_prelim_1.0.2bit +organism Homo sapiens +defaultPos QDDK01000003v1:25272283-25282283 +orderKey 7 +scientificName Homo sapiens +htmlPath genomes/GCA_003070785.1_HG02059_prelim_1.0/html/GCA_003070785.1_HG02059_prelim_1.0.description.html + +genome GCA_002872155.1_NA19434_prelim_1.0 +trackDb genomes/GCA_002872155.1_NA19434_prelim_1.0/GCA_002872155.1_NA19434_prelim_1.0.trackDb.txt +groups groups.txt +description Luhya, Kenya +twoBitPath genomes/GCA_002872155.1_NA19434_prelim_1.0/GCA_002872155.1_NA19434_prelim_1.0.2bit +organism Homo sapiens +defaultPos POCD01000001v1:30671592-30681592 +orderKey 9 +scientificName Homo sapiens +htmlPath genomes/GCA_002872155.1_NA19434_prelim_1.0/html/GCA_002872155.1_NA19434_prelim_1.0.description.html + +genome GCA_002209525.2_HG01352_prelim_2.1 +trackDb genomes/GCA_002209525.2_HG01352_prelim_2.1/GCA_002209525.2_HG01352_prelim_2.1.trackDb.txt +groups groups.txt +description Columbian, Colombia +twoBitPath genomes/GCA_002209525.2_HG01352_prelim_2.1/GCA_002209525.2_HG01352_prelim_2.1.2bit +organism Homo sapiens +defaultPos NKHJ01000001v1:21647487-21657487 +orderKey 11 +scientificName Homo sapiens +htmlPath genomes/GCA_002209525.2_HG01352_prelim_2.1/html/GCA_002209525.2_HG01352_prelim_2.1.description.html + +genome GCA_002208065.1_HG00733_prelim_1.0 +trackDb genomes/GCA_002208065.1_HG00733_prelim_1.0/GCA_002208065.1_HG00733_prelim_1.0.trackDb.txt +groups groups.txt +description Puerto Rican, Puerto Rico +twoBitPath genomes/GCA_002208065.1_HG00733_prelim_1.0/GCA_002208065.1_HG00733_prelim_1.0.2bit +organism Homo sapiens +defaultPos NJRJ01000001v1:25191877-25201877 +orderKey 13 +scientificName Homo sapiens +htmlPath genomes/GCA_002208065.1_HG00733_prelim_1.0/html/GCA_002208065.1_HG00733_prelim_1.0.description.html + +genome GCA_002180035.3_HG00514_prelim_3.0 +trackDb genomes/GCA_002180035.3_HG00514_prelim_3.0/GCA_002180035.3_HG00514_prelim_3.0.trackDb.txt +groups groups.txt +description Southern Han Chinese, China +twoBitPath genomes/GCA_002180035.3_HG00514_prelim_3.0/GCA_002180035.3_HG00514_prelim_3.0.2bit +organism Homo sapiens +defaultPos chr1:83008419-83018419 +orderKey 15 +scientificName Homo sapiens +htmlPath genomes/GCA_002180035.3_HG00514_prelim_3.0/html/GCA_002180035.3_HG00514_prelim_3.0.description.html + +genome GCA_002077035.3_NA12878_prelim_3.0 +trackDb genomes/GCA_002077035.3_NA12878_prelim_3.0/GCA_002077035.3_NA12878_prelim_3.0.trackDb.txt +groups groups.txt +description Utah/Mormon, USA +twoBitPath genomes/GCA_002077035.3_NA12878_prelim_3.0/GCA_002077035.3_NA12878_prelim_3.0.2bit +organism Homo sapiens +defaultPos chr1:83093578-83103578 +orderKey 17 +scientificName Homo sapiens +htmlPath genomes/GCA_002077035.3_NA12878_prelim_3.0/html/GCA_002077035.3_NA12878_prelim_3.0.description.html + +genome GCA_001524155.4_NA19240_prelim_3.0 +trackDb genomes/GCA_001524155.4_NA19240_prelim_3.0/GCA_001524155.4_NA19240_prelim_3.0.trackDb.txt +groups groups.txt +description Yoruban, Nigeria +twoBitPath genomes/GCA_001524155.4_NA19240_prelim_3.0/GCA_001524155.4_NA19240_prelim_3.0.2bit +organism Homo sapiens +defaultPos chr1:82995534-83005534 +orderKey 19 +scientificName Homo sapiens +htmlPath genomes/GCA_001524155.4_NA19240_prelim_3.0/html/GCA_001524155.4_NA19240_prelim_3.0.description.html +