0f8419d02e05c36d05ac476a12845bf0e88908d8
braney
  Thu May 27 15:35:01 2021 -0700
changing Daniels snp archive tracks to super tracks

diff --git src/hg/lib/cartRewrite.c src/hg/lib/cartRewrite.c
index 6d9429c..d2c5727 100644
--- src/hg/lib/cartRewrite.c
+++ src/hg/lib/cartRewrite.c
@@ -1,95 +1,169 @@
 
 #include "common.h"
 #include "cart.h"
 
-static char *edit0tracks[] =
+static char *edit0Mm10tracks[] =
+{
+"snp142",
+"snp142Mult",
+"snp138",
+"snp138Common",
+"snp138Mult",
+"snp137Common",
+"snp137Mult",
+"snp137",
+};
+
+static char *edit0Hg19tracks[] =
+{
+"snp151Flagged",
+"snp151Mult",
+"snp150Mult",
+"snp150Flagged",
+"snp150",
+"snp150Common",
+"snp149Mult",
+"snp149Flagged",
+"snp149",
+"snp149Common",
+"snp147Flagged",
+"snp147Mult",
+"snp147Common",
+"snp147",
+"snp146Mult",
+"snp146Flagged",
+"snp146",
+"snp146Common",
+"snp144Mult",
+"snp144Flagged",
+"snp144Common",
+"snp144",
+"snp142Mult",
+"snp142Flagged",
+"snp142Common",
+"snp142",
+"snp141Flagged",
+"snp141Common",
+"snp141",
+"snp138Flagged",
+"snp138Mult",
+"snp138",
+"snp138Common",
+"snp137Common",
+"snp137Flagged",
+"snp137Mult",
+"snp137",
+"snp135Common",
+"snp135Flagged",
+"snp135Mult",
+"snp135",
+"snp132Common",
+"snp132Flagged",
+"snp132Mult",
+"snp132",
+"snp131",
+"snp130",
+};
+
+static char *edit0Hg38tracks[] =
 {
 "snp151Flagged",
 "snp151Mult",
 "snp150Mult",
 "snp150",
 "snp150Common",
 "snp150Flagged",
 "snp149Mult",
 "snp149",
 "snp149Common",
 "snp149Flagged",
 "snp141Mult",
 "snp141Flagged",
 "snp141Common",
 "snp141",
 "snp142Mult",
 "snp142Flagged",
 "snp142Common",
 "snp142",
 "snp144Mult",
 "snp144Flagged",
 "snp144Common",
 "snp144",
 "snp147Mult",
 "snp147Flagged",
 "snp147Common",
 "snp147",
 "snp146Mult",
 "snp146Flagged",
 "snp146Common",
 "snp146",
 };
 
-static void cartEdit0(struct cart *cart)
-/* Moving a bunch of SNP tracks to an archive super track.   We need
- * to turn on the super track if any of what are now subTracks are visible.
- */
+static void turnOnSuper(struct cart *cart, char **trackNames, unsigned numTracks, char *superTrackName)
 {
 boolean turnOnSuper = FALSE;
-int length = ArraySize(edit0tracks);
 int ii;
 
-printf("cartEdit0 ");
-
 // go through all the tracks moved into the supertrack
-for(ii = 0; ii < length; ii++)
+for(ii = 0; ii < numTracks; ii++)
     {
-    char *vis = cartOptionalString(cart, edit0tracks[ii]);
+    char *vis = cartOptionalString(cart, trackNames[ii]);
 
     if (vis)
         {
         if (sameString(vis, "dense") || sameString(vis, "pack") || sameString(vis, "full") )
             {
             // Turn on the super track since one of its subtracks was visible before
-            printf("turning on super ");
             turnOnSuper = TRUE;
             break;
             }
         }
     }
 
 if (turnOnSuper)
-    cartSetString(cart, "dbSnpArchive", "show");
+    cartSetString(cart, superTrackName, "show");
+}
+
+static void cartEdit0(struct cart *cart)
+/* Moving a bunch of SNP tracks to an archive super track.   We need
+ * to turn on the super track if any of what are now subTracks are visible.
+ */
+{
+// hg38 tracks
+int length = ArraySize(edit0Hg38tracks);
+turnOnSuper(cart, edit0Hg38tracks, length, "dbSnpArchive");
+
+// mm10 tracks
+length = ArraySize(edit0Mm10tracks);
+turnOnSuper(cart, edit0Mm10tracks, length, "dbSnpArchive");
+
+// hg19 tracks
+length = ArraySize(edit0Hg19tracks);
+turnOnSuper(cart, edit0Hg19tracks, length, "dbSnpArchive");
 }
 
 // Here's the list of cart rewrite functions
 struct cartRewrite
 {
 void (*func)(struct cart *cart);
 };
 
 static struct cartRewrite cartRewrites[] =
 {
 { cartEdit0},
 };
 
 void cartRewrite(struct cart *cart, unsigned trackDbCartVersion, unsigned cartVersion)
 /* Rewrite the cart to update it to expectations of trackDb. */
 {
 if (trackDbCartVersion > ArraySize(cartRewrites))
     errAbort("Do not have cart rewrite rules to bring it up to version %d\n", trackDbCartVersion);
 
 // call the rewrite functions to bring us up to the trackDb cart version
 int ii;
 for(ii = cartVersion; ii < trackDbCartVersion; ii++)
     (cartRewrites[ii].func)(cart);
 
 cartSetVersion(cart, trackDbCartVersion);
 }