0aa35a82784e4be65d90c63b99980963619361dc dschmelt Fri May 7 16:49:52 2021 -0700 Fixing typo in longLabel for v6 refs #27444 diff --git src/hg/makeDb/trackDb/trackDb.transMap.ra src/hg/makeDb/trackDb/trackDb.transMap.ra index b8d62bb..288f9e9 100644 --- src/hg/makeDb/trackDb/trackDb.transMap.ra +++ src/hg/makeDb/trackDb/trackDb.transMap.ra @@ -1,388 +1,388 @@ ############################################################################# # V4 ############################################################################# track transMap superTrack on shortLabel TransMap longLabel TransMap Alignments group genes track transMapV4 superTrack on shortLabel TransMap V4 longLabel TransMap Alignments Version 4 html transMap group genes track transMapEnsemblV4 superTrack transMapV4 pack shortLabel TransMap Ensembl longLabel TransMap Ensembl and GENCODE Mappings Version 4 html transMapEnsembl transMapSrcSet ensembl group genes type bigPsl priority 10.001 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.ensembl.transMapV4.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapEnsemblV4 searchType bigPsl track transMapRefSeqV4 superTrack transMapV4 pack shortLabel TransMap RefGene longLabel TransMap RefSeq Gene Mappings Version 4 html transMapRefSeq transMapSrcSet refseq group genes type bigPsl priority 10.003 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.refseq.transMapV4.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapRefSeqV4 searchType bigPsl track transMapRnaV4 superTrack transMapV4 pack shortLabel TransMap RNA longLabel TransMap GenBank RNA Mappings Version 4 html transMapRna transMapSrcSet rna group genes type bigPsl priority 10.004 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.rna.transMapV4.bigPsl searchIndex name,srcTransId,geneName searchTable transMapRnaV4 searchType bigPsl track transMapEstV4 superTrack transMapV4 hide shortLabel TransMap ESTs longLabel TransMap EST Mappings Version 4 html transMapEst transMapSrcSet est group genes type bigPsl priority 10.005 color 0,100,0 canPack on visibility hide baseColorDefault none baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V4/$D.est.transMapV4.bigPsl searchIndex name,srcTransId searchTable transMapEstV4 searchType bigPsl ############################################################################# # V5 ############################################################################# track transMapV5 superTrack on shortLabel TransMap V5 longLabel TransMap Alignments Version 5 html transMapV5 group genes track transMapEnsemblV5 superTrack transMapV5 pack shortLabel TransMap Ensembl longLabel TransMap Ensembl and GENCODE Mappings Version 5 html transMapEnsembl transMapSrcSet ensembl group genes type bigPsl priority 10.001 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.ensembl.transMapV5.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapEnsemblV5 searchType bigPsl track transMapRefSeqV5 superTrack transMapV5 pack shortLabel TransMap RefGene longLabel TransMap RefSeq Gene Mappings Version 5 html transMapRefSeq transMapSrcSet refseq group genes type bigPsl priority 10.003 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.refseq.transMapV5.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapRefSeqV5 searchType bigPsl track transMapRnaV5 superTrack transMapV5 hide shortLabel TransMap RNA longLabel TransMap GenBank RNA Mappings Version 5 html transMapRna transMapSrcSet rna group genes type bigPsl priority 10.004 color 0,100,0 canPack on visibility hide baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.rna.transMapV5.bigPsl searchIndex name,srcTransId,geneName searchTable transMapRnaV5 searchType bigPsl track transMapEstV5 superTrack transMapV5 hide shortLabel TransMap ESTs longLabel TransMap EST Mappings Version 5 html transMapEst transMapSrcSet est group genes type bigPsl priority 10.005 color 0,100,0 canPack on visibility hide baseColorDefault none baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V5/$D.est.transMapV5.bigPsl searchIndex name,srcTransId searchTable transMapEstV5 searchType bigPsl ############################################################################# # V6 ############################################################################# track transMapV6 superTrack on shortLabel TransMap V6 -longLabel TransMap Alignments Version 5 +longLabel TransMap Alignments Version 6 html transMapV6 group genes track transMapEnsemblV6 superTrack transMapV6 pack shortLabel TransMap Ensembl - longLabel TransMap Ensembl and GENCODE Mappings Version 5 + longLabel TransMap Ensembl and GENCODE Mappings Version 6 html transMapEnsembl transMapSrcSet ensembl group genes type bigPsl priority 10.001 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId,geneType,transcriptType defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V6/$D.ensembl.transMapV6.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapEnsemblV6 searchType bigPsl track transMapRefSeqV6 superTrack transMapV6 pack shortLabel TransMap RefGene - longLabel TransMap RefSeq Gene Mappings Version 5 + longLabel TransMap RefSeq Gene Mappings Version 6 html transMapRefSeq transMapSrcSet refseq group genes type bigPsl priority 10.003 color 0,100,0 canPack on visibility pack baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName,geneId defaultLabelFields orgAbbrev,geneName labelSeparator " " bigDataUrl /gbdb/$D/transMap/V6/$D.refseq.transMapV6.bigPsl searchIndex name,srcTransId,geneName,geneId searchTable transMapRefSeqV6 searchType bigPsl track transMapRnaV6 superTrack transMapV6 hide shortLabel TransMap RNA - longLabel TransMap GenBank RNA Mappings Version 5 + longLabel TransMap GenBank RNA Mappings Version 6 html transMapRna transMapSrcSet rna group genes type bigPsl priority 10.004 color 0,100,0 canPack on visibility hide baseColorDefault diffCodons baseColorUseCds given baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 showCdsAllScales . showCdsMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name,geneName defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V6/$D.rna.transMapV6.bigPsl searchIndex name,srcTransId,geneName searchTable transMapRnaV6 searchType bigPsl track transMapEstV6 superTrack transMapV6 hide shortLabel TransMap ESTs - longLabel TransMap EST Mappings Version 5 + longLabel TransMap EST Mappings Version 6 html transMapEst transMapSrcSet est group genes type bigPsl priority 10.005 color 0,100,0 canPack on visibility hide baseColorDefault none baseColorUseSequence lfExtra indelDoubleInsert on indelQueryInsert on showDiffBasesAllScales . showDiffBasesMaxZoom 10000.0 labelFields commonName,orgAbbrev,srcDb,srcTransId,name defaultLabelFields orgAbbrev,srcTransId labelSeparator " " bigDataUrl /gbdb/$D/transMap/V6/$D.est.transMapV6.bigPsl searchIndex name,srcTransId searchTable transMapEstV6 searchType bigPsl