8105a202940b970cb7daee5097013e5f3b655c12 gperez2 Thu May 27 15:56:19 2021 -0700 Adding a data access section to the cpgIslandSuper track, refs #27584 diff --git src/hg/makeDb/trackDb/cpgIslandSuper.html src/hg/makeDb/trackDb/cpgIslandSuper.html index 61c6768..8106cfc 100644 --- src/hg/makeDb/trackDb/cpgIslandSuper.html +++ src/hg/makeDb/trackDb/cpgIslandSuper.html @@ -47,29 +47,40 @@ used for the construction of the track <em>Unmasked CpG</em>. The track <em>CpG Islands</em> is constructed on the sequence after all masked sequence is removed. </p> <p>The CpG count is the number of CG dinucleotides in the island. The Percentage CpG is the ratio of CpG nucleotide bases (twice the CpG count) to the length. The ratio of observed to expected CpG is calculated according to the formula (cited in Gardiner-Garden <em>et al</em>. (1987)): <pre> Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G)</pre> where N = length of sequence.</p> +<h2>Data access</h2> +<p> +CpG islands and its associated tables can be explored interactively using the +<a href="../goldenPath/help/api.html" target="_blank">REST API</a>, the +<a href="/cgi-bin/hgTables" target="_blank">Table Browser</a> or the +<a href="/cgi-bin/hgIntegrator" target="_blank">Data Integrator</a>. +All the tables can also be queried directly from our public MySQL +servers, with more information available on our +<a target="_blank" href="/goldenPath/help/mysql.html">help page</a> as well as on +<a target="_blank" href="http://genome.ucsc.edu/blog/tag/mysql/">our blog</a>.</p> + <h2>Credits</h2> <p>This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).</p> <h2>References</h2> <p> Gardiner-Garden M, Frommer M. <a href="https://www.sciencedirect.com/science/article/pii/0022283687906899" target="_blank"> CpG islands in vertebrate genomes</a>. <em>J Mol Biol</em>. 1987 Jul 20;196(2):261-82. PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/3656447" target="_blank">3656447</a> </p>