2eb7675b61bc79306e6ec54839140d2b40b31bf5
hiram
  Mon May 24 12:19:29 2021 -0700
canFam6 dog Tasha browser completed refs #27546

diff --git src/hg/makeDb/doc/canFam4/initialBuild.txt src/hg/makeDb/doc/canFam4/initialBuild.txt
index 011c243..8a41df8 100644
--- src/hg/makeDb/doc/canFam4/initialBuild.txt
+++ src/hg/makeDb/doc/canFam4/initialBuild.txt
@@ -885,30 +885,47 @@
 
     # XXX 2019-11-20 - ready for this after genbank runs
 
     featureBits -enrichment canFam4 refGene ncbiRefSeq 
  # refGene 0.402%, ncbiRefSeq 3.148%, both 0.402%, cover 99.90%, enrich 31.73x
     featureBits -enrichment canFam4 ncbiRefSeq refGene
  # ncbiRefSeq 3.148%, refGene 0.402%, both 0.402%, cover 12.76%, enrich 31.73x
 
     featureBits -enrichment canFam4 ncbiRefSeqCurated refGene
  # ncbiRefSeqCurated 0.401%, refGene 0.402%, both 0.400%, cover 99.66%, enrich 247.79x
 
     featureBits -enrichment canFam4 refGene ncbiRefSeqCurated
  # refGene 0.402%, ncbiRefSeqCurated 0.401%, both 0.400%, cover 99.33%, enrich 247.79x
 
 #########################################################################
+# LIFTOVER TO canFam6 (DONE - 2021-05-17 - Hiram)
+    ssh hgwdev
+    mkdir /hive/data/genomes/canFam4/bed/blat.canFam6.2021-05-17
+    cd /hive/data/genomes/canFam4/bed/blat.canFam6.2021-05-17
+    doSameSpeciesLiftOver.pl -verbose=2 \
+        -debug -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+        -ooc=/hive/data/genomes/canFam4/jkStuff/canFam4.11.ooc \
+         canFam4 canFam6
+    time (doSameSpeciesLiftOver.pl -verbose=2 \
+        -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
+        -ooc=/hive/data/genomes/canFam4/jkStuff/canFam4.11.ooc \
+         canFam4 canFam6) > doLiftOverToCanFam6.log 2>&1
+    # real    231m10.701s
+
+    # see if the liftOver menus function in the browser from canFam4 to canFam6
+
+#########################################################################
 # LIFTOVER TO canFam5 (DONE - 2020-07-28 - Hiram)
     ssh hgwdev
     mkdir /hive/data/genomes/canFam4/bed/blat.canFam5.2020-07-28
     cd /hive/data/genomes/canFam4/bed/blat.canFam5.2020-07-28
     doSameSpeciesLiftOver.pl -verbose=2 \
         -debug -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
         -ooc=/hive/data/genomes/canFam4/jkStuff/canFam4.11.ooc \
          canFam4 canFam5
     time (doSameSpeciesLiftOver.pl -verbose=2 \
         -bigClusterHub=ku -dbHost=hgwdev -workhorse=hgwdev \
         -ooc=/hive/data/genomes/canFam4/jkStuff/canFam4.11.ooc \
          canFam4 canFam5) > doLiftOverToCanFam5.log 2>&1
     # real    286m56.444s
 
     # see if the liftOver menus function in the browser from canFam4 to canFam5