1390c194b5568d35616a26e699e56a0858e5aad2
hiram
  Fri May 28 13:43:15 2021 -0700
otto update scripts runnin in /hive/data/outside/ncbi/genomes/ncbiRefSeq refs #27553

diff --git src/hg/makeDb/doc/ncbiRefSeq/runHg38.sh src/hg/makeDb/doc/ncbiRefSeq/runHg38.sh
new file mode 100755
index 0000000..fd92713
--- /dev/null
+++ src/hg/makeDb/doc/ncbiRefSeq/runHg38.sh
@@ -0,0 +1,17 @@
+#!/bin/bash
+
+set -beEu -o pipefail
+
+export TOP="/hive/data/outside/ncbi/genomes/ncbiRefSeq"
+cd "${TOP}"
+
+export db="hg38"
+export Db="Hg38"
+export sumFile="prev${Db}.sum"
+export asmId="GCF_000001405.39_GRCh38.p13"
+export dateStamp=`date "+%F"`
+export wrkDir="/hive/data/genomes/${db}/bed/ncbiRefSeq.p13.${dateStamp}"
+export sumFile="${TOP}/prev${Db}.sum"
+export gffFile="/hive/data/outside/ncbi/genomes/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.gff.gz"
+
+${TOP}/runUcscDb.sh "${db}" "${Db}" "${sumFile}" "${asmId}" "${wrkDir}" "${gffFile}"