Commits for kent

v415_base to v416_preview (2021-05-24 to 2021-06-01) v416

b7250793caf3c402744e5facdeaa2dc37479f67e Wed May 19 11:27:13 2021 -0700

• Removing docs about matrix market support, which is just a dream at the moment.
  • src/utils/matrixClusterColumns/matrixClusterColumns.c - lines changed 6, context: html, text, full: html, text

558767decf16c46bbf8c63ea4b36839fbee66ef8 Thu May 20 11:24:09 2021 -0700

• Fixing error messages per code review #27569
  • src/hca/toHca/hcaAffixTsvToTemplate/hcaAffixTsvToTemplate.c - lines changed 2, context: html, text, full: html, text

69bc117defcc4d25684b377b8733a5db6d067425 Mon May 24 16:11:39 2021 -0700

• First cut of a utility to convert matrixMarket format matrices to tsv format.
  • src/utils/matrixMarketToTsv/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/matrixMarketToTsv.c - lines changed 98, context: html, text, full: html, text

4eff628b14fb39cf753d251ccc7d9844d2879a5b Mon May 24 17:28:35 2021 -0700

• Adding test set
  • src/utils/matrixMarketToTsv/makefile - lines changed 1, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/tests/expected.tsv - lines changed 6, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/tests/genes.lst - lines changed 5, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/tests/in.mtx - lines changed 6, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/tests/makefile - lines changed 3, context: html, text, full: html, text
  • src/utils/matrixMarketToTsv/tests/samples.lst - lines changed 10, context: html, text, full: html, text

d18a8487b9078785b90e331bf388e0fcbff3d181 Mon May 24 17:29:24 2021 -0700

• Cleaning up diagnostic/verbose output
  • src/utils/matrixMarketToTsv/matrixMarketToTsv.c - lines changed 9, context: html, text, full: html, text

2805e576864fdec1a250b9c5c2a69809f9bbd80c Mon May 24 17:32:38 2021 -0700

• Adding matrixMarketToTsv to parent makefile
  • src/utils/makefile - lines changed 1, context: html, text, full: html, text

1f36dac15fb404318112d4c3271d4b14eba70223 Mon May 24 17:35:05 2021 -0700

• Making library tolerate extra lines that start with % in matrix market.
  • src/lib/matrixMarket.c - lines changed 11, context: html, text, full: html, text

9d1d39df4cc0762442566c52387ab40d71b105cf Wed May 26 14:42:08 2021 -0700

• Fixed make clean problem. Redmine #27600
  • src/utils/matrixMarketToTsv/tests/makefile - lines changed 3, context: html, text, full: html, text