e4d6c24a36a8d98fc285930bb3b390b1f77a56d9 max Mon May 31 06:42:38 2021 -0700 update to GBIC docs page, refs #27636 diff --git src/hg/htdocs/goldenPath/help/gbic.html src/hg/htdocs/goldenPath/help/gbic.html index d7c83cd..f12845e 100755 --- src/hg/htdocs/goldenPath/help/gbic.html +++ src/hg/htdocs/goldenPath/help/gbic.html @@ -29,40 +29,41 @@ or our public website. Please see the <a href='mirror.html#considerations-before-installing-a-genome-browser' title=''>Installation of a UCSC Genome Browser on a local machine (mirror)</a> page for a summary of installation options, including the pros and cons of using a mirror installation via the GBiC program vs. using GBiB. </p> <p> The program works by setting up MySQL (MariaDB), Apache, and Ghostscript, and then copying the Genome Browser CGIs onto the machine under <code>/usr/local/apache/</code>. Because it also deactivates the default Apache htdocs/cgi folders, it is best run on a new machine, or at least a host that is not already used as a web server. The tool can also download full or partial assembly databases, update the Genome Browser CGIs, and remove temporary files (aka “trash cleaning”). </p> <p> -The GBiC program has been tested with Ubuntu 14/16 LTS, Centos 6/6.7/7.2, and Fedora 20. -</p> +The GBiC program has been tested with Ubuntu 14/16/18/20 LTS, Centos 6/6.7/7.2/8, and Fedora 20. +It has been tested on virtual machines in Amazon EC2 (Centos 6 and Ubuntu 14) and Microsoft +Azure (Ubuntu).</p> -<p> -It has also been tested on virtual machines in Amazon EC2 (Centos 6 and Ubuntu 14) and Microsoft -Azure (Ubuntu). If you want to load data on the fly from UCSC, you need to select the +<p>If you want to load data on the fly from UCSC, you need to select the data centers “US West (N. California)” (Amazon) or “West US” (Microsoft) for best performance. Other data centers (e.g. East Coast) will require a local copy of the genome assembly, which -requires 2TB-7TB of storage for the hg19 assembly. Note that this exceeds the current maximum -size of a single Amazon EBS volume. +requires 2TB-7TB of storage for the hg19 assembly. Note that this exceeds the +current maximum size of a single Amazon EBS volume, so you may need to use RAID +striping of multiple EBS volumes, or Amazon EFS for the /gbdb files and Amazon +Aurora for the MySQL tables. </p> <a name='quick-start-instructions'></a> <h2>Quick Start Instructions</h2> <p> Download the GBiC program from the <a href='https://genome-store.ucsc.edu/' title=''>UCSC Genome Browser store</a>. </p> <p> Run the program as root, like this: </p> <pre><code>sudo bash browserSetup.sh install</code></pre>