8afa5f78425ec225b329db5e1e204384ad0bdfc1 max Tue Jun 1 05:06:00 2021 -0700 adding revel track for hg38, refs #27142 diff --git src/hg/makeDb/doc/hg38/revel.txt src/hg/makeDb/doc/hg38/revel.txt index 7a9da92..497b327 100644 --- src/hg/makeDb/doc/hg38/revel.txt +++ src/hg/makeDb/doc/hg38/revel.txt @@ -1,8 +1,9 @@ -# Max, Thu Apr 15 03:35:10 PDT 2021 -cd /hive/data/genomes/hg38/bed/revel -time python ~/kent/src/hg/makeDb/revel/revelToWig.py ../../../hg19/bed/revel/revel_grch38_all_chromosomes.csv hg38 -wigToBigWig t.wig ../chrom.sizes t.bw & -wigToBigWig c.wig ../chrom.sizes c.bw & -wigToBigWig a.wig ../chrom.sizes a.bw & -wigToBigWig g.wig ../chrom.sizes g.bw & - +#sed -i 's/chrom=/chrom=chr/' *.wig +wget 'https://www.google.com/url?q=https%3A%2F%2Frothsj06.u.hpc.mssm.edu%2Frevel-v1.3_all_chromosomes.zip&sa=D&sntz=1&usg=AFQjCNHuQrCvuq--CoiCGwtDvQhBnTYj2Q' +unzip revel-v1.3_all_chromosomes.zip +time python ~/kent/src/hg/makeDb/revel/revelToWig-hg38.py ../../chrom.sizes revel_with_transcript_ids +wigToBigWig a.wig ../../chrom.sizes a.bw & +wigToBigWig t.wig ../../chrom.sizes t.bw & +wigToBigWig c.wig ../../chrom.sizes c.bw & +wigToBigWig g.wig ../../chrom.sizes g.bw & +rm *.wig -f