585200184be9957f52b64807b8c7b1dc501b90c7
chmalee
  Wed Jun 2 13:21:37 2021 -0700
Added gfPcr since we had added isPcr recently. Also added notes for manually updating blat/FOOTER.txt

diff --git src/utils/qa/weeklybld/makeUserApps.csh src/utils/qa/weeklybld/makeUserApps.csh
index c14dc0d..905ac93 100755
--- src/utils/qa/weeklybld/makeUserApps.csh
+++ src/utils/qa/weeklybld/makeUserApps.csh
@@ -40,35 +40,40 @@
 cd kent/src 
 make -j 12 BINDIR=$BINDIR DESTDIR=$DESTDIR userApps > make.log
 ./utils/userApps/mkREADME.sh $DESTDIR$BINDIR FOOTER.txt
 cd ../..
 
 # copy everything if 64 bit
 if ("$HOST" == "hgwdev") then
   #clear out the old and copy in the new
   foreach f ( ${DESTDIR}${BINDIR}/* )
     echo $f
     switch ($f)
 	# these three go in the blat subdirectory
 	case ${DESTDIR}${BINDIR}/blat:
 	case ${DESTDIR}${BINDIR}/gfClient:
 	case ${DESTDIR}${BINDIR}/gfServer:
+	case ${DESTDIR}${BINDIR}/gfPcr:
 	case ${DESTDIR}${BINDIR}/isPcr:
 	    ssh -n qateam@hgdownload "rm /mirrordata/apache/htdocs/admin/exe/$BINDIR/blat/$f:t"
 	    scp -p $f qateam@hgdownload:/mirrordata/apache/htdocs/admin/exe/$BINDIR/blat/$f:t
 	    ssh -n qateam@genome-euro "rm /mirrordata/apache/htdocs/admin/exe/$BINDIR/blat/$f:t"
 	    scp -p $f qateam@genome-euro:/mirrordata/apache/htdocs/admin/exe/$BINDIR/blat/$f:t
 	    breaksw
 	default:
 	    ssh -n qateam@hgdownload "rm /mirrordata/apache/htdocs/admin/exe/$BINDIR/$f:t"
 	    scp -p $f qateam@hgdownload:/mirrordata/apache/htdocs/admin/exe/$BINDIR/$f:t
 	    ssh -n qateam@genome-euro "rm /mirrordata/apache/htdocs/admin/exe/$BINDIR/$f:t"
 	    scp -p $f qateam@genome-euro:/mirrordata/apache/htdocs/admin/exe/$BINDIR/$f:t
 	    breaksw
     endsw
   end
 endif
 
+# because blat/FOOTER.txt is not updated automatically, 
+# on rare occasions when you add new blat utilities, you can do it manually,
+# refer to NOTES-for-manually-updating-BLAT-FOOTER.txt
+
 echo "userApps $MACHTYPE built on $HOST and scp'd to hgdownload and genome-euro [${0}: START=${ScriptStart} END=`date`]"
 
 exit 0