44ac62ce8e655528d624d2b861b358981599d044 hiram Wed Jun 2 12:08:22 2021 -0700 Ensembl v104 update complete refs #27616 diff --git src/hg/utils/automation/EnsGeneAutomate.pm src/hg/utils/automation/EnsGeneAutomate.pm index fc75710..94f714e 100755 --- src/hg/utils/automation/EnsGeneAutomate.pm +++ src/hg/utils/automation/EnsGeneAutomate.pm @@ -11592,46 +11592,44 @@ 'GCA_002775205.2_X_maculatus-5.0-male' => 'xiphophorus_maculatus_core_103_5', 'GCF_002775205.1_X_maculatus-5.0-male' => 'xiphophorus_maculatus_core_103_5', 'GCA_009762305.1_mZalCal1.pri' => 'zalophus_californianus_core_103_1', 'GCA_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis_core_103_101', 'GCF_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis_core_103_101', 'zonAlb1' => 'zonotrichia_albicollis_core_103_101', 'GCA_001281735.1_ASM128173v1' => 'zosterops_lateralis_melanops_core_103_1', ); my %ensGeneGtfFileNames_104 = ( 'GCA_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus/Acanthochromis_polyacanthus.ASM210954v1.104.gtf.gz', 'GCF_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus/Acanthochromis_polyacanthus.ASM210954v1.104.gtf.gz', 'GCA_004320145.1_Accipiter_nisus_ver1.0' => 'accipiter_nisus/Accipiter_nisus.Accipiter_nisus_ver1.0.104.gtf.gz', 'GCA_002007445.2_ASM200744v2' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ASM200744v2.104.gtf.gz', 'GCF_002007445.1_ASM200744v2' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ASM200744v2.104.gtf.gz', -'GCF_000004335.2_AilMel_1.0' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.104.gtf.gz', -'ailMel1' => 'ailuropoda_melanoleuca/Ailuropoda_melanoleuca.ailMel1.104.gtf.gz', 'GCA_003947215.1_ASM394721v1' => 'amazona_collaria/Amazona_collaria.ASM394721v1.104.gtf.gz', 'GCA_000751415.1_Midas_v5' => 'amphilophus_citrinellus/Amphilophus_citrinellus.Midas_v5.104.gtf.gz', 'GCA_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris/Amphiprion_ocellaris.AmpOce1.0.104.gtf.gz', 'GCF_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris/Amphiprion_ocellaris.AmpOce1.0.104.gtf.gz', 'GCA_003047355.1_Nemo_v1' => 'amphiprion_percula/Amphiprion_percula.Nemo_v1.104.gtf.gz', 'GCA_900324465.1_fAnaTes1.1' => 'anabas_testudineus/Anabas_testudineus.fAnaTes1.1.104.gtf.gz', 'GCA_900324465.2_fAnaTes1.2' => 'anabas_testudineus/Anabas_testudineus.fAnaTes1.2.104.gtf.gz', 'GCF_900324465.2_fAnaTes1.2' => 'anabas_testudineus/Anabas_testudineus.fAnaTes1.2.104.gtf.gz', 'GCA_008746955.1_ASM874695v1' => 'anas_platyrhynchos/Anas_platyrhynchos.ASM874695v1.104.gtf.gz', 'GCA_002743455.1_CAU_duck1.0' => 'anas_platyrhynchos_platyrhynchos/Anas_platyrhynchos_platyrhynchos.CAU_duck1.0.104.gtf.gz', 'GCA_002224875.1_ASM222487v1' => 'anas_zonorhyncha/Anas_zonorhyncha.ASM222487v1.104.gtf.gz', -'GCA_000090745.2_AnoCar2.0' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.104.gtf.gz', -'GCF_000090745.1_AnoCar2.0' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.104.gtf.gz', -'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0.104.gtf.gz', +'GCA_000090745.2_AnoCar2.0' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0v2.104.gtf.gz', +'GCF_000090745.1_AnoCar2.0' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0v2.104.gtf.gz', +'anoCar2' => 'anolis_carolinensis/Anolis_carolinensis.AnoCar2.0v2.104.gtf.gz', 'GCA_002592135.1_ASM259213v1' => 'anser_brachyrhynchus/Anser_brachyrhynchus.ASM259213v1.104.gtf.gz', 'GCA_002166845.1_GooseV1.0' => 'anser_cygnoides/Anser_cygnoides.GooseV1.0.104.gtf.gz', 'GCA_000952055.2_Anan_2.0' => 'aotus_nancymaae/Aotus_nancymaae.Anan_2.0.104.gtf.gz', 'GCF_000952055.2_Anan_2.0' => 'aotus_nancymaae/Aotus_nancymaae.Anan_2.0.104.gtf.gz', 'aotNan1' => 'aotus_nancymaae/Aotus_nancymaae.Anan_2.0.104.gtf.gz', 'GCA_003342985.1_aptHaa1' => 'apteryx_haastii/Apteryx_haastii.aptHaa1.104.gtf.gz', 'GCA_003342965.1_aptOwe1' => 'apteryx_owenii/Apteryx_owenii.aptOwe1.104.gtf.gz', 'GCA_003343035.1_aptRow1' => 'apteryx_rowi/Apteryx_rowi.aptRow1.104.gtf.gz', 'GCF_003343035.1_aptRow1' => 'apteryx_rowi/Apteryx_rowi.aptRow1.104.gtf.gz', 'GCA_900496995.2_bAquChr1.2' => 'aquila_chrysaetos_chrysaetos/Aquila_chrysaetos_chrysaetos.bAquChr1.2.104.gtf.gz', 'GCF_900496995.1_bAquChr1.2' => 'aquila_chrysaetos_chrysaetos/Aquila_chrysaetos_chrysaetos.bAquChr1.2.104.gtf.gz', 'GCA_900246225.3_fAstCal1.2' => 'astatotilapia_calliptera/Astatotilapia_calliptera.fAstCal1.2.104.gtf.gz', 'GCF_900246225.1_fAstCal1.2' => 'astatotilapia_calliptera/Astatotilapia_calliptera.fAstCal1.2.104.gtf.gz', 'GCA_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/Astyanax_mexicanus.Astyanax_mexicanus-2.0.104.gtf.gz', 'GCF_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/Astyanax_mexicanus.Astyanax_mexicanus-2.0.104.gtf.gz', @@ -11849,52 +11847,51 @@ 'GCF_000225785.1_LatCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.104.gtf.gz', 'latCha1' => 'latimeria_chalumnae/Latimeria_chalumnae.LatCha1.104.gtf.gz', 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/Lepidothrix_coronata.Lepidothrix_coronata-1.0.104.gtf.gz', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/Lepidothrix_coronata.Lepidothrix_coronata-1.0.104.gtf.gz', 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.104.gtf.gz', 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.104.gtf.gz', 'lepOcu1' => 'lepisosteus_oculatus/Lepisosteus_oculatus.LepOcu1.104.gtf.gz', 'GCA_009667805.1_ASM966780v1' => 'leptobrachium_leishanense/Leptobrachium_leishanense.ASM966780v1.104.gtf.gz', 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica/Lonchura_striata_domestica.LonStrDom1.104.gtf.gz', 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.104.gtf.gz', 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.104.gtf.gz', 'loxAfr3' => 'loxodonta_africana/Loxodonta_africana.loxAfr3.104.gtf.gz', 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/Lynx_canadensis.mLynCan4_v1.p.104.gtf.gz', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/Lynx_canadensis.mLynCan4_v1.p.104.gtf.gz', 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.104.gtf.gz', -'macFas5' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_5.0.104.gtf.gz', 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis/Macaca_fascicularis.Macaca_fascicularis_6.0.104.gtf.gz', 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.104.gtf.gz', 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.104.gtf.gz', 'rheMac10' => 'macaca_mulatta/Macaca_mulatta.Mmul_10.104.gtf.gz', 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.104.gtf.gz', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.104.gtf.gz', 'macNem1' => 'macaca_nemestrina/Macaca_nemestrina.Mnem_1.0.104.gtf.gz', 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli/Malurus_cyaneus_samueli.mCya_1.0.104.gtf.gz', 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus/Manacus_vitellinus.ASM171598v2.104.gtf.gz', 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.104.gtf.gz', 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.104.gtf.gz', 'manLeu1' => 'mandrillus_leucophaeus/Mandrillus_leucophaeus.Mleu.le_1.0.104.gtf.gz', 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota/Marmota_marmota_marmota.marMar2.1.104.gtf.gz', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/Marmota_marmota_marmota.marMar2.1.104.gtf.gz', 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/Mastacembelus_armatus.fMasArm1.1.104.gtf.gz', 'GCA_900324485.2_fMasArm1.2' => 'mastacembelus_armatus/Mastacembelus_armatus.fMasArm1.2.104.gtf.gz', 'GCF_900324485.2_fMasArm1.2' => 'mastacembelus_armatus/Mastacembelus_armatus.fMasArm1.2.104.gtf.gz', 'GCA_000238955.5_M_zebra_UMD2a' => 'maylandia_zebra/Maylandia_zebra.M_zebra_UMD2a.104.gtf.gz', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra/Maylandia_zebra.M_zebra_UMD2a.104.gtf.gz', 'GCA_000146605.2_Turkey_2.01' => 'meleagris_gallopavo/Meleagris_gallopavo.Turkey_2.01.104.gtf.gz', -'melGal1' => 'meleagris_gallopavo/Meleagris_gallopavo.Turkey_2.01.104.gtf.gz', +'melGal5' => 'meleagris_gallopavo/Meleagris_gallopavo.Turkey_5.1.104.gtf.gz', 'GCA_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.104.gtf.gz', 'GCF_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.104.gtf.gz', 'melUnd1' => 'melopsittacus_undulatus/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.104.gtf.gz', 'GCA_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/Meriones_unguiculatus.MunDraft-v1.0.104.gtf.gz', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/Meriones_unguiculatus.MunDraft-v1.0.104.gtf.gz', 'GCA_000349665.1_MesAur1.0' => 'mesocricetus_auratus/Mesocricetus_auratus.MesAur1.0.104.gtf.gz', 'GCF_000349665.1_MesAur1.0' => 'mesocricetus_auratus/Mesocricetus_auratus.MesAur1.0.104.gtf.gz', 'mesAur1' => 'mesocricetus_auratus/Mesocricetus_auratus.MesAur1.0.104.gtf.gz', 'GCA_000165445.3_Mmur_3.0' => 'microcebus_murinus/Microcebus_murinus.Mmur_3.0.104.gtf.gz', 'GCF_000165445.2_Mmur_3.0' => 'microcebus_murinus/Microcebus_murinus.Mmur_3.0.104.gtf.gz', 'micMur3' => 'microcebus_murinus/Microcebus_murinus.Mmur_3.0.104.gtf.gz', 'GCA_000317375.1_MicOch1.0' => 'microtus_ochrogaster/Microtus_ochrogaster.MicOch1.0.104.gtf.gz', 'GCF_000317375.1_MicOch1.0' => 'microtus_ochrogaster/Microtus_ochrogaster.MicOch1.0.104.gtf.gz', 'micOch1' => 'microtus_ochrogaster/Microtus_ochrogaster.MicOch1.0.104.gtf.gz', 'GCA_001698575.1_ASM169857v1' => 'mola_mola/Mola_mola.ASM169857v1.104.gtf.gz', @@ -12156,46 +12153,44 @@ 'GCA_002775205.2_X_maculatus-5.0-male' => 'xiphophorus_maculatus/Xiphophorus_maculatus.X_maculatus-5.0-male.104.gtf.gz', 'GCF_002775205.1_X_maculatus-5.0-male' => 'xiphophorus_maculatus/Xiphophorus_maculatus.X_maculatus-5.0-male.104.gtf.gz', 'GCA_009762305.1_mZalCal1.pri' => 'zalophus_californianus/Zalophus_californianus.mZalCal1.pri.104.gtf.gz', 'GCA_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.104.gtf.gz', 'GCF_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.104.gtf.gz', 'zonAlb1' => 'zonotrichia_albicollis/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.104.gtf.gz', 'GCA_001281735.1_ASM128173v1' => 'zosterops_lateralis_melanops/Zosterops_lateralis_melanops.ASM128173v1.104.gtf.gz', ); my %ensGeneFtpPeptideFileNames_104 = ( 'GCA_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus/pep/Acanthochromis_polyacanthus.ASM210954v1.pep.all.fa.gz', 'GCF_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus/pep/Acanthochromis_polyacanthus.ASM210954v1.pep.all.fa.gz', 'GCA_004320145.1_Accipiter_nisus_ver1.0' => 'accipiter_nisus/pep/Accipiter_nisus.Accipiter_nisus_ver1.0.pep.all.fa.gz', 'GCA_002007445.2_ASM200744v2' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ASM200744v2.pep.all.fa.gz', 'GCF_002007445.1_ASM200744v2' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ASM200744v2.pep.all.fa.gz', -'GCF_000004335.2_AilMel_1.0' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.pep.all.fa.gz', -'ailMel1' => 'ailuropoda_melanoleuca/pep/Ailuropoda_melanoleuca.ailMel1.pep.all.fa.gz', 'GCA_003947215.1_ASM394721v1' => 'amazona_collaria/pep/Amazona_collaria.ASM394721v1.pep.all.fa.gz', 'GCA_000751415.1_Midas_v5' => 'amphilophus_citrinellus/pep/Amphilophus_citrinellus.Midas_v5.pep.all.fa.gz', 'GCA_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris/pep/Amphiprion_ocellaris.AmpOce1.0.pep.all.fa.gz', 'GCF_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris/pep/Amphiprion_ocellaris.AmpOce1.0.pep.all.fa.gz', 'GCA_003047355.1_Nemo_v1' => 'amphiprion_percula/pep/Amphiprion_percula.Nemo_v1.pep.all.fa.gz', 'GCA_900324465.1_fAnaTes1.1' => 'anabas_testudineus/pep/Anabas_testudineus.fAnaTes1.1.pep.all.fa.gz', 'GCA_900324465.2_fAnaTes1.2' => 'anabas_testudineus/pep/Anabas_testudineus.fAnaTes1.2.pep.all.fa.gz', 'GCF_900324465.2_fAnaTes1.2' => 'anabas_testudineus/pep/Anabas_testudineus.fAnaTes1.2.pep.all.fa.gz', 'GCA_008746955.1_ASM874695v1' => 'anas_platyrhynchos/pep/Anas_platyrhynchos.ASM874695v1.pep.all.fa.gz', 'GCA_002743455.1_CAU_duck1.0' => 'anas_platyrhynchos_platyrhynchos/pep/Anas_platyrhynchos_platyrhynchos.CAU_duck1.0.pep.all.fa.gz', 'GCA_002224875.1_ASM222487v1' => 'anas_zonorhyncha/pep/Anas_zonorhyncha.ASM222487v1.pep.all.fa.gz', -'GCA_000090745.2_AnoCar2.0' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.pep.all.fa.gz', -'GCF_000090745.1_AnoCar2.0' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.pep.all.fa.gz', -'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0.pep.all.fa.gz', +'GCA_000090745.2_AnoCar2.0' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0v2.pep.all.fa.gz', +'GCF_000090745.1_AnoCar2.0' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0v2.pep.all.fa.gz', +'anoCar2' => 'anolis_carolinensis/pep/Anolis_carolinensis.AnoCar2.0v2.pep.all.fa.gz', 'GCA_002592135.1_ASM259213v1' => 'anser_brachyrhynchus/pep/Anser_brachyrhynchus.ASM259213v1.pep.all.fa.gz', 'GCA_002166845.1_GooseV1.0' => 'anser_cygnoides/pep/Anser_cygnoides.GooseV1.0.pep.all.fa.gz', 'GCA_000952055.2_Anan_2.0' => 'aotus_nancymaae/pep/Aotus_nancymaae.Anan_2.0.pep.all.fa.gz', 'GCF_000952055.2_Anan_2.0' => 'aotus_nancymaae/pep/Aotus_nancymaae.Anan_2.0.pep.all.fa.gz', 'aotNan1' => 'aotus_nancymaae/pep/Aotus_nancymaae.Anan_2.0.pep.all.fa.gz', 'GCA_003342985.1_aptHaa1' => 'apteryx_haastii/pep/Apteryx_haastii.aptHaa1.pep.all.fa.gz', 'GCA_003342965.1_aptOwe1' => 'apteryx_owenii/pep/Apteryx_owenii.aptOwe1.pep.all.fa.gz', 'GCA_003343035.1_aptRow1' => 'apteryx_rowi/pep/Apteryx_rowi.aptRow1.pep.all.fa.gz', 'GCF_003343035.1_aptRow1' => 'apteryx_rowi/pep/Apteryx_rowi.aptRow1.pep.all.fa.gz', 'GCA_900496995.2_bAquChr1.2' => 'aquila_chrysaetos_chrysaetos/pep/Aquila_chrysaetos_chrysaetos.bAquChr1.2.pep.all.fa.gz', 'GCF_900496995.1_bAquChr1.2' => 'aquila_chrysaetos_chrysaetos/pep/Aquila_chrysaetos_chrysaetos.bAquChr1.2.pep.all.fa.gz', 'GCA_900246225.3_fAstCal1.2' => 'astatotilapia_calliptera/pep/Astatotilapia_calliptera.fAstCal1.2.pep.all.fa.gz', 'GCF_900246225.1_fAstCal1.2' => 'astatotilapia_calliptera/pep/Astatotilapia_calliptera.fAstCal1.2.pep.all.fa.gz', 'GCA_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/pep/Astyanax_mexicanus.Astyanax_mexicanus-2.0.pep.all.fa.gz', 'GCF_000372685.2_Astyanax_mexicanus-2.0' => 'astyanax_mexicanus/pep/Astyanax_mexicanus.Astyanax_mexicanus-2.0.pep.all.fa.gz', @@ -12413,52 +12408,51 @@ 'GCF_000225785.1_LatCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz', 'latCha1' => 'latimeria_chalumnae/pep/Latimeria_chalumnae.LatCha1.pep.all.fa.gz', 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/pep/Lepidothrix_coronata.Lepidothrix_coronata-1.0.pep.all.fa.gz', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata/pep/Lepidothrix_coronata.Lepidothrix_coronata-1.0.pep.all.fa.gz', 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz', 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz', 'lepOcu1' => 'lepisosteus_oculatus/pep/Lepisosteus_oculatus.LepOcu1.pep.all.fa.gz', 'GCA_009667805.1_ASM966780v1' => 'leptobrachium_leishanense/pep/Leptobrachium_leishanense.ASM966780v1.pep.all.fa.gz', 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica/pep/Lonchura_striata_domestica.LonStrDom1.pep.all.fa.gz', 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz', 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz', 'loxAfr3' => 'loxodonta_africana/pep/Loxodonta_africana.loxAfr3.pep.all.fa.gz', 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/pep/Lynx_canadensis.mLynCan4_v1.p.pep.all.fa.gz', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis/pep/Lynx_canadensis.mLynCan4_v1.p.pep.all.fa.gz', 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz', -'macFas5' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_5.0.pep.all.fa.gz', 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis/pep/Macaca_fascicularis.Macaca_fascicularis_6.0.pep.all.fa.gz', 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz', 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz', 'rheMac10' => 'macaca_mulatta/pep/Macaca_mulatta.Mmul_10.pep.all.fa.gz', 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz', 'macNem1' => 'macaca_nemestrina/pep/Macaca_nemestrina.Mnem_1.0.pep.all.fa.gz', 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli/pep/Malurus_cyaneus_samueli.mCya_1.0.pep.all.fa.gz', 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus/pep/Manacus_vitellinus.ASM171598v2.pep.all.fa.gz', 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz', 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz', 'manLeu1' => 'mandrillus_leucophaeus/pep/Mandrillus_leucophaeus.Mleu.le_1.0.pep.all.fa.gz', 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota/pep/Marmota_marmota_marmota.marMar2.1.pep.all.fa.gz', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota/pep/Marmota_marmota_marmota.marMar2.1.pep.all.fa.gz', 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus/pep/Mastacembelus_armatus.fMasArm1.1.pep.all.fa.gz', 'GCA_900324485.2_fMasArm1.2' => 'mastacembelus_armatus/pep/Mastacembelus_armatus.fMasArm1.2.pep.all.fa.gz', 'GCF_900324485.2_fMasArm1.2' => 'mastacembelus_armatus/pep/Mastacembelus_armatus.fMasArm1.2.pep.all.fa.gz', 'GCA_000238955.5_M_zebra_UMD2a' => 'maylandia_zebra/pep/Maylandia_zebra.M_zebra_UMD2a.pep.all.fa.gz', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra/pep/Maylandia_zebra.M_zebra_UMD2a.pep.all.fa.gz', 'GCA_000146605.2_Turkey_2.01' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.Turkey_2.01.pep.all.fa.gz', -'melGal1' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.Turkey_2.01.pep.all.fa.gz', +'melGal5' => 'meleagris_gallopavo/pep/Meleagris_gallopavo.Turkey_5.1.pep.all.fa.gz', 'GCA_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus/pep/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.pep.all.fa.gz', 'GCF_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus/pep/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.pep.all.fa.gz', 'melUnd1' => 'melopsittacus_undulatus/pep/Melopsittacus_undulatus.Melopsittacus_undulatus_6.3.pep.all.fa.gz', 'GCA_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/pep/Meriones_unguiculatus.MunDraft-v1.0.pep.all.fa.gz', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus/pep/Meriones_unguiculatus.MunDraft-v1.0.pep.all.fa.gz', 'GCA_000349665.1_MesAur1.0' => 'mesocricetus_auratus/pep/Mesocricetus_auratus.MesAur1.0.pep.all.fa.gz', 'GCF_000349665.1_MesAur1.0' => 'mesocricetus_auratus/pep/Mesocricetus_auratus.MesAur1.0.pep.all.fa.gz', 'mesAur1' => 'mesocricetus_auratus/pep/Mesocricetus_auratus.MesAur1.0.pep.all.fa.gz', 'GCA_000165445.3_Mmur_3.0' => 'microcebus_murinus/pep/Microcebus_murinus.Mmur_3.0.pep.all.fa.gz', 'GCF_000165445.2_Mmur_3.0' => 'microcebus_murinus/pep/Microcebus_murinus.Mmur_3.0.pep.all.fa.gz', 'micMur3' => 'microcebus_murinus/pep/Microcebus_murinus.Mmur_3.0.pep.all.fa.gz', 'GCA_000317375.1_MicOch1.0' => 'microtus_ochrogaster/pep/Microtus_ochrogaster.MicOch1.0.pep.all.fa.gz', 'GCF_000317375.1_MicOch1.0' => 'microtus_ochrogaster/pep/Microtus_ochrogaster.MicOch1.0.pep.all.fa.gz', 'micOch1' => 'microtus_ochrogaster/pep/Microtus_ochrogaster.MicOch1.0.pep.all.fa.gz', 'GCA_001698575.1_ASM169857v1' => 'mola_mola/pep/Mola_mola.ASM169857v1.pep.all.fa.gz', @@ -12719,33 +12713,31 @@ 'GCA_001444195.1_Xiphophorus_couchianus-4.0.1' => 'xiphophorus_couchianus/pep/Xiphophorus_couchianus.Xiphophorus_couchianus-4.0.1.pep.all.fa.gz', 'GCA_002775205.2_X_maculatus-5.0-male' => 'xiphophorus_maculatus/pep/Xiphophorus_maculatus.X_maculatus-5.0-male.pep.all.fa.gz', 'GCF_002775205.1_X_maculatus-5.0-male' => 'xiphophorus_maculatus/pep/Xiphophorus_maculatus.X_maculatus-5.0-male.pep.all.fa.gz', 'GCA_009762305.1_mZalCal1.pri' => 'zalophus_californianus/pep/Zalophus_californianus.mZalCal1.pri.pep.all.fa.gz', 'GCA_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis/pep/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.pep.all.fa.gz', 'GCF_000385455.1_Zonotrichia_albicollis-1.0.1' => 'zonotrichia_albicollis/pep/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.pep.all.fa.gz', 'zonAlb1' => 'zonotrichia_albicollis/pep/Zonotrichia_albicollis.Zonotrichia_albicollis-1.0.1.pep.all.fa.gz', 'GCA_001281735.1_ASM128173v1' => 'zosterops_lateralis_melanops/pep/Zosterops_lateralis_melanops.ASM128173v1.pep.all.fa.gz', ); my %ensGeneFtpMySqlFileNames_104 = ( 'GCA_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus_core_104_1', 'GCF_002109545.1_ASM210954v1' => 'acanthochromis_polyacanthus_core_104_1', 'GCA_004320145.1_Accipiter_nisus_ver1.0' => 'accipiter_nisus_core_104_1', 'GCA_002007445.2_ASM200744v2' => 'ailuropoda_melanoleuca_core_104_2', -'GCF_000004335.2_AilMel_1.0' => 'ailuropoda_melanoleuca_core_104_2', 'GCF_002007445.1_ASM200744v2' => 'ailuropoda_melanoleuca_core_104_2', -'ailMel1' => 'ailuropoda_melanoleuca_core_104_2', 'GCA_003947215.1_ASM394721v1' => 'amazona_collaria_core_104_1', 'GCA_000751415.1_Midas_v5' => 'amphilophus_citrinellus_core_104_5', 'GCA_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris_core_104_1', 'GCF_002776465.1_AmpOce1.0' => 'amphiprion_ocellaris_core_104_1', 'GCA_003047355.1_Nemo_v1' => 'amphiprion_percula_core_104_1', 'GCA_900324465.1_fAnaTes1.1' => 'anabas_testudineus_core_104_12', 'GCA_900324465.2_fAnaTes1.2' => 'anabas_testudineus_core_104_12', 'GCF_900324465.2_fAnaTes1.2' => 'anabas_testudineus_core_104_12', 'GCA_008746955.1_ASM874695v1' => 'anas_platyrhynchos_core_104_1', 'GCA_002743455.1_CAU_duck1.0' => 'anas_platyrhynchos_platyrhynchos_core_104_1', 'GCA_002224875.1_ASM222487v1' => 'anas_zonorhyncha_core_104_1', 'GCA_000090745.2_AnoCar2.0' => 'anolis_carolinensis_core_104_2', 'GCF_000090745.1_AnoCar2.0' => 'anolis_carolinensis_core_104_2', 'anoCar2' => 'anolis_carolinensis_core_104_2', 'GCA_002592135.1_ASM259213v1' => 'anser_brachyrhynchus_core_104_1', @@ -12978,51 +12970,50 @@ 'latCha1' => 'latimeria_chalumnae_core_104_1', 'GCA_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata_core_104_1', 'GCF_001604755.1_Lepidothrix_coronata-1.0' => 'lepidothrix_coronata_core_104_1', 'GCA_000242695.1_LepOcu1' => 'lepisosteus_oculatus_core_104_1', 'GCF_000242695.1_LepOcu1' => 'lepisosteus_oculatus_core_104_1', 'lepOcu1' => 'lepisosteus_oculatus_core_104_1', 'GCA_009667805.1_ASM966780v1' => 'leptobrachium_leishanense_core_104_1', 'GCA_002197715.1_LonStrDom1' => 'lonchura_striata_domestica_core_104_1', 'GCA_000001905.1_Loxafr3.0' => 'loxodonta_africana_core_104_3', 'GCF_000001905.1_Loxafr3.0' => 'loxodonta_africana_core_104_3', 'loxAfr3' => 'loxodonta_africana_core_104_3', 'GCA_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis_core_104_41', 'GCF_007474595.1_mLynCan4_v1.p' => 'lynx_canadensis_core_104_41', 'GCA_011100615.1_Macaca_fascicularis_6.0' => 'macaca_fascicularis_core_104_6', 'GCF_000364345.1_Macaca_fascicularis_5.0' => 'macaca_fascicularis_core_104_6', -'macFas5' => 'macaca_fascicularis_core_104_6', 'GCA_003339765.3_Mmul_10' => 'macaca_mulatta_core_104_10', 'GCF_003339765.1_Mmul_10' => 'macaca_mulatta_core_104_10', 'rheMac10' => 'macaca_mulatta_core_104_10', 'GCA_000956065.1_Mnem_1.0' => 'macaca_nemestrina_core_104_1', 'GCF_000956065.1_Mnem_1.0' => 'macaca_nemestrina_core_104_1', 'macNem1' => 'macaca_nemestrina_core_104_1', 'GCA_009741485.1_mCya_1.0' => 'malurus_cyaneus_samueli_core_104_1', 'GCA_001715985.2_ASM171598v2' => 'manacus_vitellinus_core_104_2', 'GCA_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus_core_104_1', 'GCF_000951045.1_Mleu.le_1.0' => 'mandrillus_leucophaeus_core_104_1', 'manLeu1' => 'mandrillus_leucophaeus_core_104_1', 'GCA_001458135.1_marMar2.1' => 'marmota_marmota_marmota_core_104_21', 'GCF_001458135.1_marMar2.1' => 'marmota_marmota_marmota_core_104_21', 'GCA_900324485.1_fMasArm1.1' => 'mastacembelus_armatus_core_104_12', 'GCA_900324485.2_fMasArm1.2' => 'mastacembelus_armatus_core_104_12', 'GCF_900324485.2_fMasArm1.2' => 'mastacembelus_armatus_core_104_12', 'GCA_000238955.5_M_zebra_UMD2a' => 'maylandia_zebra_core_104_2', 'GCF_000238955.4_M_zebra_UMD2a' => 'maylandia_zebra_core_104_2', 'GCA_000146605.2_Turkey_2.01' => 'meleagris_gallopavo_core_104_51', -'melGal1' => 'meleagris_gallopavo_core_104_51', +'melGal5' => 'meleagris_gallopavo_core_104_51', 'GCA_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus_core_104_63', 'GCF_000238935.1_Melopsittacus_undulatus_6.3' => 'melopsittacus_undulatus_core_104_63', 'melUnd1' => 'melopsittacus_undulatus_core_104_63', 'GCA_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus_core_104_1', 'GCF_002204375.1_MunDraft-v1.0' => 'meriones_unguiculatus_core_104_1', 'GCA_000349665.1_MesAur1.0' => 'mesocricetus_auratus_core_104_10', 'GCF_000349665.1_MesAur1.0' => 'mesocricetus_auratus_core_104_10', 'mesAur1' => 'mesocricetus_auratus_core_104_10', 'GCA_000165445.3_Mmur_3.0' => 'microcebus_murinus_core_104_3', 'GCF_000165445.2_Mmur_3.0' => 'microcebus_murinus_core_104_3', 'micMur3' => 'microcebus_murinus_core_104_3', 'GCA_000317375.1_MicOch1.0' => 'microtus_ochrogaster_core_104_10', 'GCF_000317375.1_MicOch1.0' => 'microtus_ochrogaster_core_104_10', 'micOch1' => 'microtus_ochrogaster_core_104_10', 'GCA_001698575.1_ASM169857v1' => 'mola_mola_core_104_1',