d5c57763036582f8e7ee53c14ab880ac2c922c31 max Wed Jun 2 06:07:20 2021 -0700 more steps towards kent-core, refs #27614 diff --git build/kent-core/README.md build/kent-core/README.md new file mode 100644 index 0000000..acc81b9 --- /dev/null +++ build/kent-core/README.md @@ -0,0 +1,24 @@ +This is a partial copy of the UCSC Genome Browser source code repository +https://github.com/ucscGenomeBrowser/kent/. It includes all files that are +under an MIT license or in the public domain. All files can be packaged, +redistributed and modified as needed by other projects. + +The code should build with a simple "cd src; make utils". We test this on CentOS and OSX. +If you run into problems, please open a ticket or contact genome@soe.ucsc.edu. + +If you want to file issues or pull-requests, please do that at the original repo, at +https://github.com/ucscGenomeBrowser/kent/, not here. The changes will get merged into +this repository automatically with the next release (see kent/build/kent-core/). + +You can find short descriptions for most tools here: +http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt + +Here are a few selected tools that are useful when building track and assembly hubs: + +bedToBigBed - create a bigBed file for rectangle-shaped annotations (genes, enhancers, promoters, etc) +bigBedToBed - the inverse of bedToBigBed +bigBedInfo - Show information about a bigBed file. Can extract .autoSql field definitions. + +wigToBigWig - create a bigWig file for signal (barchart) annotations from a .wig file +bigWigToWig - the inverse of wigToBigWig +bigWigInfo - show information about bigWig files