e0d0dd65f53bb547c201ae1aa2bf0fa6dbbafe09 max Thu Jun 3 08:25:17 2021 -0700 changes after code review, refs #27648 diff --git build/kent-core/README.md build/kent-core/README.md index acc81b9..cdb0498 100644 --- build/kent-core/README.md +++ build/kent-core/README.md @@ -1,24 +1,27 @@ This is a partial copy of the UCSC Genome Browser source code repository https://github.com/ucscGenomeBrowser/kent/. It includes all files that are under an MIT license or in the public domain. All files can be packaged, redistributed and modified as needed by other projects. The code should build with a simple "cd src; make utils". We test this on CentOS and OSX. If you run into problems, please open a ticket or contact genome@soe.ucsc.edu. If you want to file issues or pull-requests, please do that at the original repo, at https://github.com/ucscGenomeBrowser/kent/, not here. The changes will get merged into this repository automatically with the next release (see kent/build/kent-core/). You can find short descriptions for most tools here: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt Here are a few selected tools that are useful when building track and assembly hubs: bedToBigBed - create a bigBed file for rectangle-shaped annotations (genes, enhancers, promoters, etc) -bigBedToBed - the inverse of bedToBigBed -bigBedInfo - Show information about a bigBed file. Can extract .autoSql field definitions. -wigToBigWig - create a bigWig file for signal (barchart) annotations from a .wig file -bigWigToWig - the inverse of wigToBigWig -bigWigInfo - show information about bigWig files +|Tool |Description | +|---|---| +|bedToBigBed | create a bigBed file for rectangle-shaped annotations (genes, enhancers, promoters, etc) | +|bigBedToBed | the inverse of bedToBigBed | +|bigBedInfo | Show information about a bigBed file. Can extract .autoSql field definitions | +|wigToBigWig | create a bigWig file for signal (barchart) annotations from a .wig file | +|bigWigToWig | the inverse of wigToBigWig | +|bigWigInfo | show information about bigWig files |