33b0e2745227c061b96dddcb215ee77c9fb6ad59 brianlee Mon Jun 28 15:06:19 2021 -0700 Wordsmithing trackDb announcement refs #26598 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 52fd0df..1764a1e 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -50,35 +50,35 @@ </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> <a name="062821"></a> <h2>June 28, 2021 Version 3 of Track Database Definition Document Released</h2> <p> The <a href="help/trackDb/trackDbHub.html" target="_blank">Track Database Definition Document</a> defining hub settings has been updated from version two to version three. This document primarily serves as a library of settings that users can refer to when they are setting up and configuring their own track hubs. The update in the version is to account for two new sections that highlight the new <a href="help/bigLolly.html">bigLolly</a> type specialized for variant data and the new <a href="help/vcf.html#trio" >vcfPhasedTrio</a> type specialized for phased VCF data.</p> <p> -The new settings for these types are included in their relevant +The new specifications for these types are included in their relevant sections such as <code>vcfChildSample</code> and <code>vcfUseAltSampleNames</code> for the new <a href="help/trackDb/trackDbHub.html#vcfPhasedTrio" -target="_blank">vcfPhasedTrio format</a>, or <code>lollySizeField</code> and <code>lollyField</code> -for the new <a href="help/trackDb/trackDbHub.html#bigLolly" target="_blank">bigLolly format</a> +target="_blank">vcfPhasedTrio settings</a>, or <code>lollySizeField</code> and <code>lollyField</code> +for the new <a href="help/trackDb/trackDbHub.html#bigLolly" target="_blank">bigLolly settings</a> with full descriptions in the document.</p> <p> The Track Database Definition Document also serves a second function beyond defining settings as providing a versioned specification for those sites that support and display data from track hubs such as Ensembl and NCBI. See this <a href="http://genome.ucsc.edu/blog/how-portable-is-your-track-hub-use-hubcheck-to-find-out/" target="_blank">blog post</a> to learn more about this second element of the document and using the hubCheck utility to gain an idea of how your hub's settings might work on different sites.</p> <a name="062421"></a> <h2>June 24, 2021 New REVEL missense scores track for hg38 and hg19</h2> <p> The UCSC Genome Browser has just added the REVEL tracks to hg38 and hg19, a much requested clinical dataset, now visualized and interactive with our tools. REVEL scores predict the pathogenicity of missense variants for every possible basepair change across the entire genome's coding sequences.