4d5f3cd7c83132956e5d279f268fac6e235f1e41 dschmelt Tue Jun 29 11:23:07 2021 -0700 Minor edits for CR refs #27772 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 1764a1e..d226992 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -66,49 +66,48 @@ sections such as <code>vcfChildSample</code> and <code>vcfUseAltSampleNames</code> for the new <a href="help/trackDb/trackDbHub.html#vcfPhasedTrio" target="_blank">vcfPhasedTrio settings</a>, or <code>lollySizeField</code> and <code>lollyField</code> for the new <a href="help/trackDb/trackDbHub.html#bigLolly" target="_blank">bigLolly settings</a> with full descriptions in the document.</p> <p> The Track Database Definition Document also serves a second function beyond defining settings as providing a versioned specification for those sites that support and display data from track hubs such as Ensembl and NCBI. See this <a href="http://genome.ucsc.edu/blog/how-portable-is-your-track-hub-use-hubcheck-to-find-out/" target="_blank">blog post</a> to learn more about this second element of the document and using the hubCheck utility to gain an idea of how your hub's settings might work on different sites.</p> <a name="062421"></a> <h2>June 24, 2021 New REVEL missense scores track for hg38 and hg19</h2> <p> -The UCSC Genome Browser has just added the REVEL tracks to hg38 and hg19, -a much requested clinical dataset, now visualized and interactive with our tools. +The UCSC Genome Browser has just added the REVEL tracks to the hg38 and hg19 reference genomes. +This much requested clinical dataset is now visualized and interactive on the Genome Browser. REVEL scores predict the pathogenicity of missense variants for every possible basepair change across the entire genome's coding sequences. This dataset bases its scores on 13 individual tools to produce high predictive performance of common and rare mutations. To learn more about the REVEL dataset, please visit their site below:</p> <ul> <li><a href="https://sites.google.com/site/revelgenomics/" target="_blank"> https://sites.google.com/site/revelgenomics</a></li> </ul> <p> To access these tracks on the Genome Browser, please visit their description pages below and change the tracks' visibility.</p> <ul> <li><a href="/cgi-bin/hgTrackUi?db=hg38&g=revel">REVEL track on hg38</a></li> <li><a href="/cgi-bin/hgTrackUi?db=hg19&g=revel">REVEL track on hg19</a></li> </ul> -</p> <p> Thanks to REVEL for providing these annotations, as well as Max Haeussler and Dan Schmelter of the UCSC Genome Browser group for their work in creating and releasing these tracks.</p> <a name="061421"></a> <h2>Jun. 14, 2021 Updated Ensembl gene tracks for 48 assemblies (v104)</h2> <p> We are pleased to announce updated <a href="http://uswest.ensembl.org/info/genome/genebuild/index.html" target="_blank"> Ensembl gene annotation</a> tracks corresponding to <strong>v104</strong> for the following assemblies:</p><br> <div class="container"> <div class="row"> <div class="col-sm-4">