2e85d518a6bc169b901b3c0b57e24b45694296fc markd Tue Jun 29 16:05:38 2021 -0700 update GENCODE VM27 from pre-release from final diff --git src/hg/makeDb/outside/gencode/gencodeLoad.mk src/hg/makeDb/outside/gencode/gencodeLoad.mk index b85814c..ecbda4d 100644 --- src/hg/makeDb/outside/gencode/gencodeLoad.mk +++ src/hg/makeDb/outside/gencode/gencodeLoad.mk @@ -22,33 +22,33 @@ tmpExt = ${host}.${ppid}.tmp SHELL = bash -e export SHELLOPTS=pipefail ## # programs, etc ## mach = $(shell uname -m) ## # Release info and files from Sanger. # BEGIN EDIT THESE EACH RELEASE ## preRelease = no #preRelease = yes -db = hg38 +#db = hg38 #db = hg19 -#db = mm39 +db = mm39 #db = mm10 ifeq (${db},mm10) grcRefAssembly = GRCm38 verBase = M25 prevVer = M24 backmapTargetVer = M25 ver = ${verBase}lift37 gencodeOrg = Gencode_mouse ftpReleaseSubdir = release_${verBase}/GRCm38_mapping annGffTypeName = chr_patch_hapl_scaff.annotation isBackmap = yes else ifeq (${db},mm39) grcRefAssembly = GRCm39 ver = M27 prevVer = M26