3e968a25a2e9635f916fb3eeac0b3e2147cfba7c angie Mon Jun 28 08:43:35 2021 -0700 Add links to outbreak.info for lineages in results table & details. diff --git src/hg/hgPhyloPlace/phyloPlace.h src/hg/hgPhyloPlace/phyloPlace.h index b2a803c..64391d4 100644 --- src/hg/hgPhyloPlace/phyloPlace.h +++ src/hg/hgPhyloPlace/phyloPlace.h @@ -12,30 +12,31 @@ #include "seqWindow.h" #include "trashDir.h" #define PHYLOPLACE_DATA_DIR "hgPhyloPlaceData" // Allow users to upload a lot of sequences, but put limits on how much detail we'll show and // how many custom tracks we'll create. #define MAX_SUBTREE_BUTTONS 5 #define MAX_SEQ_DETAILS 100 #define MAX_SUBTREE_CTS 10 // For usher's -K option (single subtree): #define SINGLE_SUBTREE_SIZE "1000" #define NEXTSTRAIN_DRAG_DROP_DOC "https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html" +#define OUTBREAK_INFO_URLBASE "https://outbreak.info/situation-reports?pango=" struct treeChoices /* Phylogenetic tree versions for the user to choose from. */ { char **protobufFiles; // Mutation annotated tree files in protobuf format for UShER char **metadataFiles; // Sample metadata a la GISAID's nextmeta download option char **sources; // GISAID or public char **descriptions; // Menu labels to describe the options to the user char **aliasFiles; // Two-column files associating IDs/aliases with full tree names int count; // Number of choices (and size of each array) }; struct seqInfo /* User sequences, alignments and statistics */ {