6c3f3f0988717d3e5fea2f2670351b3e19f51a3d brianlee Fri Jun 25 17:23:09 2021 -0700 Trying to clean up some htmlCheck validate newsarch.html items before adding trackDb v3 announcement. diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index ee63261..d5a9139 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -2508,32 +2508,31 @@ <h3>The 20th Anniversary of UCSC Publishing the first Human Genome</h3> <p> July 7, 2020 marks the 20th anniversary of UCSC publishing the first-ever human Genome on the Internet in 2000. This was the first time that the code for human life was replicated and spread through computers instead of through biological means. We are lucky to have some of the original publishers still with us at the Genome Browser. Thank you, David Haussler and Jim Kent for your incredible effort pushing forward the field of human genomics and open-source data sharing.</p> <p> For a timeline and pictures, please visit the <a href="https://ucscgenomics.soe.ucsc.edu/event/ 20th-anniversary-of-publishing-the-human-genome-to-the-internet/"> Genomics Institute's article on the anniversary</a> as well as this short video commemorating the occasion:</p> -<p><iframe width="560" height="315" src="https://www.youtube.com/embed/_6caCfvMIiY" -?rel=0" +<p><iframe width="560" height="315" src="https://www.youtube.com/embed/_6caCfvMIiY?rel=0" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe></p> <a name="070220"></a> <h2>Jul. 02, 2020 New video: Making links to the Genome Browser. Part 1: Dissecting / Understanding the URL</h2> <p> We are happy to announce another release to the UCSC Genome Browser <a href = "https://bit.ly/ucscVideos" target = _blank>YouTube channel</a>. </p> <p> This new video, <a href = @@ -2611,32 +2610,32 @@ <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpAlt.html'>alternate/haplotype</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpTrio.html'>trio mat/pat</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpLegacy.html'>legacy/superseded</a></th> </tr><tr> <th>Assembly statistics: </th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/asmStats.html'>primary assembly</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpAltStats.html'>alternate/haplotype</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpTrioStats.html'>trio mat/pat</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpLegacyStats.html'>legacy/superseded</a></th> </tr><tr> <th>Track statistics: </th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/trackData.html'>primary assembly</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpAltData.html'>alternate/haplotype</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpTrioData.html'>trio mat/pat</a></th> <th><a href='https://hgdownload.soe.ucsc.edu/hubs/VGP/vgpLegacyData.html'>legacy/superseded</a></th> -</tr><tr> -</tr></thead> +</tr> +</thead> </table></p> <p> All data are available from the UCSC download servers. For information on how to download specific assembly data, refer to the assembly gateway page once the hub is connected, e.g. <a href="../../cgi-bin/hgGateway?hubUrl=https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt&genome=GCA_004115265.2_mRhiFer1_v1.p" target="_blank">greater horseshoe bat</a>. This page also includes information on starting a local BLAT server for the assembly.</p> <p> We would like to thank the <a href="https://vertebrategenomesproject.org/" target="_blank">Vertebrate Genomes Project</a> and the <a href="https://genome10k.soe.ucsc.edu/" target="_blank">Genome 10k Project</a> for their sequencing efforts and making these genomes available. We would also like to thank Hiram Clawson and Luis Nassar from the Genome Browser team for the development and release of these assembly hubs.</p> @@ -6686,31 +6685,31 @@ <a href="http://dx.doi.org/10.1038/nbt.2647" target="_blank">MIT Specificity score</a>, <a href="http://dx.doi.org/10.1038/nmeth.3543" target="_blank">Moreno-Mateos Efficiency Score</a>, <a href="http://dx.doi.org/10.1038/nbt.3437" target="_blank">Doench/Fusi Efficiency Score</a>, and any off-targets.</p> <p> If you would like us to generate this track for another assembly, please notify us at <a href="mailto:genome@soe.ucsc.edu">genome@soe.ucsc.edu</a>.</p> <!-- above address is genome at soe.ucsc.edu --> <p> We would like to thank Hiram Clawson, Maximilian Haeussler, Christopher Lee, and Jairo Navarro for the development and release of these tracks.</p> <a name="071417"></a> -<h2>Jul. 14, 2017 New alternative mouse strain hub and strain-specific annotations</h3> +<h2>Jul. 14, 2017 New alternative mouse strain hub and strain-specific annotations</h2> <p> A mouse strain assembly hub is now available and shows an alignment of 16 assembled laboratory mice strains, including the reference mouse (mm10) as well as the reference rat (rn6). This hub contains some of the most common mice strains used in disease models such as NOD, BALB/c, and C3H. Each mouse strain in the assembly hub is displayed as the primary sequence along with strain-specific annotations. You can load this hub from our <a href="../cgi-bin/hgHubConnect" target="_blank">Public Hubs</a> or the following <a href="http://hgdownload.soe.ucsc.edu/hubs/mouseStrains/hubIndex.html" target="_blank">page</a>. </p> <p> Along with the release of this assembly hub, a new track is available for mm10. The <a href="../cgi-bin/hgTrackUi?db=mm10&g=strainSNPs" target="_blank">Mouse SNPs</a> track shows single nucleotide variants between the different strains of mice and all SNP and indel calls are relative to the reference mouse genome (GRCm38/mm10).</p> <p>