0363a87914ad142f466788f47b4006eea73e1f3b
hiram
  Thu Jun 24 10:33:34 2021 -0700
demote scaffoldFaToAgp from the userApps list to the UCSC only list refs #27498

diff --git src/hg/utils/makefile src/hg/utils/makefile
index baa8c4e..1ad1c8d 100644
--- src/hg/utils/makefile
+++ src/hg/utils/makefile
@@ -41,31 +41,30 @@
 	gff3ToPsl \
 	gtfToGenePred \
 	hicInfo \
 	hgvsToVcf \
 	hubCheck \
 	hubClone \
 	hubPublicCheck \
 	mafToBigMaf \
 	makeTableList \
 	oligoMatch \
 	overlapSelect \
 	positionalTblCheck \
 	pslToBigPsl \
 	tdbQuery \
 	transMapPslToGenePred \
-	scaffoldFaToAgp \
 	raSqlQuery \
 	pslLiftSubrangeBlat \
 	twoBitMask
 
 USER_APP_SCRIPTS = \
 	vai.pl
 
 SCRIPT_FILES = \
 	archiveTracks.sh \
 	dbNsfpToBed.pl \
 	dumpDb.pl \
 	mergeOverlapBed4.pl \
 	mergeSortedBed3Plus.pl \
 	mysqlRowSizes.pl \
 	${USER_APP_SCRIPTS}
@@ -75,30 +74,31 @@
 # List of directories to build of interest only at UCSC
 DIRS = ${buildRefresh} \
 	automation \
 	blatServersCheck \
 	buildReleaseLog \
 	checkUrlsInTable \
 	geoMirrorNode \
 	makeTrackIndex \
 	mysqlSecurityCheck \
 	phyloRenameAndPrune \
 	pslFixCdsJoinGap \
 	pslMismatchGapToBed \
 	pslUniq \
 	refSeqGet \
 	safePush \
+	scaffoldFaToAgp \
 	toDev64 \
 	vcfRenameAndPrune \
 	vcfToHgvs \
 	wigBedToStep
 
 TEST_DIRS = \
 	bedMergeAdjacent \
 	bedPartition \
 	genePredFilter \
 	genePredToProt \
 	gff3ToGenePred \
 	gff3ToPsl \
 	gtfToGenePred \
 	hgvsToVcf \
 	hubCheck \