1df4153e6bb5046352a48f924a8881bc4f6965d0
angie
Tue Jul 20 10:37:04 2021 -0700
Typo fix
diff --git src/hg/hgPhyloPlace/phyloPlace.c src/hg/hgPhyloPlace/phyloPlace.c
index 20cb86f..a9590e5 100644
--- src/hg/hgPhyloPlace/phyloPlace.c
+++ src/hg/hgPhyloPlace/phyloPlace.c
@@ -1687,33 +1687,33 @@
{
dyStringAppendSep(dy, ", ");
dyStringPrintf(dy, "%d: %s", bv->chromStart+1, bv->val);
}
printTooltip(dy->string);
}
printf("
%d",
qcClassForPlacements(pi->bestNodeCount), pi->bestNodeCount);
printf(" | %d",
qcClassForPScore(pi->parsimonyScore), pi->parsimonyScore);
printf(" | ");
}
else
{
if (gotClades)
- printf("n/a> | ");
+ printf("n/a | ");
if (gotLineages)
- printf("n/a> | ");
+ printf("n/a | ");
printf("n/a | n/a | n/a | n/a | n/a | ");
}
printSubtreeTd(ur->subtreeInfoList, jsonTns, si->seq->name);
puts("");
}
puts("");
}
}
static void summarizeSubtrees(struct slName *sampleIds, struct usherResults *results,
struct hash *sampleMetadata, struct tempName *jsonTns[],
struct mutationAnnotatedTree *bigTree)
/* Print a summary table of pasted/uploaded identifiers and subtrees */
{
boolean gotClades = FALSE, gotLineages = FALSE;
@@ -1742,41 +1742,41 @@
for (si = sampleIds; si != NULL; si = si->next)
{
puts("");
printf("| %s", replaceChars(si->name, "|", " | "));
struct placementInfo *pi = hashFindVal(results->samplePlacements, si->name);
if (pi)
{
if (gotClades)
printf(" | %s | ", pi->nextClade ? pi->nextClade : "n/a");
if (gotLineages)
printLineageTd(pi->pangoLineage, "n/a");
}
else
{
if (gotClades)
- printf("n/a> | ");
+ printf("n/a | ");
if (gotLineages)
- printf("n/a> | ");
+ printf("n/a | ");
}
// pangolin-assigned lineage
char *lineage = lineageForSample(sampleMetadata, si->name);
if (isNotEmpty(lineage))
printf("%s | ",
lineage, lineage);
else
- printf("n/a> | ");
+ printf("n/a | ");
// Maybe also #mutations with mouseover to show mutation path?
printSubtreeTd(results->subtreeInfoList, jsonTns, si->name);
}
puts("");
}
static struct singleNucChange *sncListFromSampleMutsAndImputed(struct slName *sampleMuts,
struct baseVal *imputedBases,
struct seqWindow *gSeqWin)
/* Convert a list of "[" names to struct singleNucChange list.
* However, if is ambiguous, skip it because variantProjector doesn't like it.
* Add imputed base predictions. */
{
struct singleNucChange *sncList = NULL;
struct slName *mut;
]