b6cbd59bc90b14b3a643ba42783040e769d238bb
chmalee
  Wed Jul 21 10:44:57 2021 -0700
Add gtexGenev8 to list of tables always downloaded by hgMirror and gbib, since it is a default track on hg38, refs #27854

diff --git src/browserbox/root/updateBrowser.sh src/browserbox/root/updateBrowser.sh
index aaea5e8..c3734d4 100755
--- src/browserbox/root/updateBrowser.sh
+++ src/browserbox/root/updateBrowser.sh
@@ -346,30 +346,35 @@
 done
 
 # MySQL tables
 for i in chromInfo cytoBand cytoBandIdeo ensemblLift extFile grp gtexGene gtexGeneModel hgFindSpec kgColor kgXref knownCanonical knownGene knownToTag ncbiRefSeq ncbiRefSeqCurated ncbiRefSeqLink ncbiRefSeqOther ncbiRefSeqPredicted ncbiRefSeqPsl refGene tableList trackDb ucscToEnsembl ucscToINSDC xenoRefGene; do
    touch /data/mysql/hg38/$i.MYD;
    touch /data/mysql/hg38/$i.MYI;
    touch /data/mysql/hg38/$i.frm;
 done
 
 # adding tables that are required for gtex, which is now a default track, #19587
 touch /data/mysql/hgFixed/gtexInfo.{MYI,MYD,frm}
 touch /data/mysql/hgFixed/gtexTissue.{MYI,MYD,frm}
 
 # -- END JUNE 2017
 
+# add gtex v8 data, which is now a default track, #27854:
+touch /data/mysql/hg38/gtexGeneModelV8.{MYI,MYD,frm}
+touch /data/mysql/hg38/gtexGeneV8.{MYI,MYD,frm}
+touch /data/mysql/hgFixed/gtexTissueV8.{MYI,MYD,frm}
+
 # Feb 2021, knownCds is required for knownGene display
 for db in hg38 mm10; do
     if [ -e "/data/mysql/$db" ] ; then
        touch /data/mysql/$db/knownCds.{MYI,MYD,frm}
     fi
 done
 
 if [ "$1" != "hgwdev" ] ; then
   echo - Updating GBDB files...
   rsync $RSYNCOPTS --existing rsync://hgdownload.soe.ucsc.edu/gbdb/ /data/gbdb/
   chown -R www-data.www-data /data/gbdb/
 fi
 
 echo - Pulling other files
 # make sure we never overwrite the hg.conf.local file