09a80236f1b65c47bb2887a2463986f152d2b191 dschmelt Tue Jul 6 13:54:28 2021 -0700 Code review changes to Data Access and longLabel refs #27802 diff --git src/hg/makeDb/trackDb/dbSnpArchive.html src/hg/makeDb/trackDb/dbSnpArchive.html index c8f4ef8..6394ef1 100755 --- src/hg/makeDb/trackDb/dbSnpArchive.html +++ src/hg/makeDb/trackDb/dbSnpArchive.html @@ -440,39 +440,45 @@
  • SNPAlleleFreq.bcp.gz and ../shared/Allele.bcp.gz provided allele frequencies. For the human assembly, allele frequencies were also taken from SNPAlleleFreq_TGP.bcp.gz .
  • Submitter handles were extracted from Batch.bcp.gz, SubSNP.bcp.gz and SNPSubSNPLink.bcp.gz.
  • SNP_bitfield.bcp.gz provided miscellaneous properties annotated by dbSNP, such as clinically-associated. See the document dbSNP_BitField_v5.pdf for details.
  • The header lines in the rs_fasta files were used for molecule type, class and observed polymorphism.

    • Data Access

    -The raw data can be explored interactively with the Table Browser, -Data Integrator, or Variant Annotation Integrator. -For automated analysis, the genome annotation can be downloaded from the downloads server for hg38, - hg19, mm10, -susScr3, -bosTau7, and galGal4 -(snp*.txt.gz) or the public MySQL server. -You can also make queries using the UCSC Genome Browser JSON APIPlease refer to our mailing list archives -for questions and example queries, or our Data Access FAQ for more information. +The raw data can be explored interactively with the +Table Browser, +Data Integrator, or +Variant Annotation Integrator. +For automated analysis, the genome annotation files can be downloaded in their entirety for +hg38, + hg19, +and mm10 as +(snp*.txt.gz). +You can also make queries using the UCSC Genome Browser +JSON API or +public MySQL server. Please refer to our +mailing list archives +for questions and example queries, or our +Data Access FAQ for more information.

    Orthologous Alleles (human assemblies only)

    For the human assembly, we provide a related table that contains orthologous alleles in the chimpanzee, orangutan and rhesus macaque reference genome assemblies. We use our liftOver utility to identify the orthologous alleles. The candidate human SNPs are a filtered list that meet the criteria: