5d40467bf390d16723a66826243f711a5cb739f7 gperez2 Thu Jul 8 14:44:40 2021 -0700 Updating news for the hg38 ncbiRefSeq track update, refs #27552 diff --git src/hg/htdocs/goldenPath/newsarch.html src/hg/htdocs/goldenPath/newsarch.html index 36ed554..45203c8 100755 --- src/hg/htdocs/goldenPath/newsarch.html +++ src/hg/htdocs/goldenPath/newsarch.html @@ -40,30 +40,57 @@ <div class="col-sm-3"> <ul> <li><a href="#2005">2005 News</a></li> <li><a href="#2004">2004 News</a></li> <li><a href="#2003">2003 News</a></li> <li><a href="#2002">2002 News</a></li> <li><a href="#2001">2001 News</a></li> </ul> </div> </div> </div> <!-- ============= 2021 archived news ============= --> <a name="2021"></a> +<a name="070821"></a> +<h2>July 08, 2021 Updated data for NCBI RefSeq tracks for human assembly hg38</h2> +<p> +We are pleased to announce the updated <a href="https://www.ncbi.nlm.nih.gov/genome/annotation_euk/ +Homo_sapiens/109.20210514/?utm_source=blog&utm_medium=referral&utm_campaign=RefSeq-release-206& +utm_term=homo-sapiens&utm_content=20210527link1" +target="_blank">NCBI RefSeq Annotation Release 109.20210514</a> tracks for the +<a href="/cgi-bin/hgTrackUi?db=hg38&g=refSeqComposite&position=default">hg38/GRCh38</a> +assembly. To keep up with the periodic version releases, we will update the NCBI RefSeq tracks +automatically for both hg19/GRCh37 and hg38/GRCh38. For all of these tracks, the alignments +and coordinates are provided by RefSeq.These tracks are organized in a composite track that +includes:</p> +<ul> + <li><b>RefSeq All</b> – all annotations from the curated and predicted sets + <li><b>RefSeq Curated</b> – curated annotations beginning with NM, NR, or NP + <li><b>RefSeq Other</b> – all other RefSeq annotations not included in RefSeq All + <li><b>RefSeq Alignments</b> – alignments of transcripts to the genome provided by RefSeq + <li><b>RefSeq Diffs</b> – alignment differences between the human reference genome(s) and RefSeq transcripts + <li><b>RefSeq Select and MANE</b> – a single Select transcript representative for each protein-coding gene + <li><b>RefSeq HGMD</b> – transcripts with clinical variants in Human Gene Mutation Database +</ul> +<p> +We would like to thank NCBI and the RefSeq Annotation database for collecting and curating these data. +We would also like to thank Hiram Clawson, Lou Nassar, and Gerardo Perez for developing and releasing these tracks. +</p> + + <a name="063021"></a> <h2>June 30, 2021 </h2> <p> The UCSC Genome Browser's list of genetic variation datasets is now more organized, with a new folder for previous dbSNP versions. We have listened to your requests and are continuing to make our site faster and easier! This change clears up some outdated less-popular links (for mm10, hg19, and hg38) while retaining all functionality. The previous versions of dbSNP can be accessed and visualized by the new dbSNP Archive supertrack.</p> <ul> <li><a href="../../cgi-bin/hgTrackUi?db=hg38&g=dbSnpArchive">dbSNP Archive for hg38</a></li> <li><a href="../../cgi-bin/hgTrackUi?db=hg19&g=dbSnpArchive">dbSNP Archive for hg19</a></li> <li><a href="../../cgi-bin/hgTrackUi?db=mm10&g=dbSnpArchive">dbSNP Archive for mm10</a></li> </ul> <p class="text-center">