f2a0929905445624aa6ed01cbe74e0104876eb08
gperez2
  Tue Jul 6 13:54:31 2021 -0700
Code review edits to hg19 makefile, updated name, refs #27805

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 2ab3ad1..ddce385 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -34530,31 +34530,31 @@
 ##############################################################################
 # Add Revel track, Max, Thu Apr 15 03:33:49 PDT 2021
 cd /hive/data/genomes/hg19/bed/revel
 aria2c https://rothsj06.u.hpc.mssm.edu/revel_grch38_all_chromosomes.csv.zip
 unzip revel_grch38_all_chromosomes.csv.zip
 # make sure that no weird chroms and no weird multi-nucleotide changes
 cat revel_grch38_all_chromosomes.csv  | tr ',' '\t' | cut -f5 | grep -v alt | awk '{print length($1)}' | uniq > lens.tmp &
 cut -d, revel_grch38_all_chromosomes.csv -f1 | uniq | sort | uniq -c > chroms.tmp &
 pigz revel_grch38_all_chromosomes.csv
 time python revelToWig.py revel_grch38_all_chromosomes.csv.gz hg19
 wigToBigWig t.wig ../../chrom.sizes t.bw &
 wigToBigWig c.wig ../../chrom.sizes c.bw  &
 wigToBigWig a.wig ../../chrom.sizes a.bw &
 wigToBigWig g.wig ../../chrom.sizes g.bw &
 ##############################################################################
-# LASTZ human/hg19 Gorilla/gorGor6 - (DONE - 2021-06-28 - Hiram)
+# LASTZ human/hg19 Gorilla/gorGor6 - (DONE - 2021-06-28 - Gerardo)
     mkdir /hive/data/genomes/hg19/bed/lastzGorGor6.2021-06-28/
     cd /hive/data/genomes/hg19/bed/lastzGorGor6.2021-06-28/
 
     printf '# human vs gorilla
 BLASTZ=/cluster/bin/penn/lastz-distrib-1.04.03/bin/lastz
 BLASTZ_T=2
 BLASTZ_O=600
 BLASTZ_E=150
 BLASTZ_M=254
 BLASTZ_K=4500
 BLASTZ_Y=15000
 BLASTZ_Q=/hive/data/staging/data/blastz/human_chimp.v2.q
 #       A     C     G     T
 # A    90  -330  -236  -356
 # C  -330   100  -318  -236