6ac74bb165759e57dc5cf57cd3eba54eaebc4a36 hiram Mon Jul 5 13:28:45 2021 -0700 adding zebrafish/T5D/GCA_018400075.1_ASM1840007v1 chainNets refs #27512 diff --git src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra index 5103e00..539ccba 100644 --- src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra +++ src/hg/makeDb/trackDb/trackDb.chainNet.asmHub.ra @@ -214,15 +214,72 @@ view net visibility full parent chainNetGCF_002742125.1 track netGCF_002742125.1 parent mafNetGCF_002742125.1Viewnet subGroups view=net shortLabel Rambouillet sheep mafNet longLabel Rambouillet sheep (Nov. 2017 GCF_002742125.1_Oar_rambouillet_v1.0) mafNet Alignment type bigMaf bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.bb summary /gbdb/$D/bbi/chainNet/$D.GCF_002742125.1.net.summary.bb speciesOrder GCF_002742125.1 html chainNet +############################################################################## +# GCA_018400075.1 - Zebrafish T5D - Danio rerio - taxId: 7955 - fish +############################################################################## +track chainNetGCA_018400075.1 +compositeTrack on +shortLabel Zebrafish T5D Chain/Net +longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1), Chain and Net Alignments +subGroup1 view Views chain=Chain net=Net +dragAndDrop subTracks +visibility hide +group compGeno +noInherit on +priority 100.1 +color 0,0,0 +altColor 100,50,0 +type bed 3 +sortOrder view=+ +matrix 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +chainMinScore 5000 +chainLinearGap loose +matrixHeader A, C, G, T +otherDb GCA_018400075.1 +html chainNet + + track chainNetGCA_018400075.1Viewchain + shortLabel Chain + view chain + visibility pack + parent chainNetGCA_018400075.1 + spectrum on + + track chainGCA_018400075.1 + parent chainNetGCA_018400075.1Viewchain + subGroups view=chain + shortLabel Zebrafish T5D Chain + longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1) Chained Alignments + type bigChain GCA_018400075.1 + bigDataUrl /gbdb/$D/bbi/chainNet/chainGCA_018400075.1.bb + linkDataUrl /gbdb/$D/bbi/chainNet/chainGCA_018400075.1Link.bb + html chainNet + + track mafNetGCA_018400075.1Viewnet + shortLabel Net + view net + visibility full + parent chainNetGCA_018400075.1 + + track netGCA_018400075.1 + parent mafNetGCA_018400075.1Viewnet + subGroups view=net + shortLabel Zebrafish T5D mafNet + longLabel Zebrafish T5D (May 2021 GCA_018400075.1_ASM1840007v1) mafNet Alignment + type bigMaf + bigDataUrl /gbdb/$D/bbi/chainNet/$D.GCA_018400075.1.net.bb + summary /gbdb/$D/bbi/chainNet/$D.GCA_018400075.1.net.summary.bb + speciesOrder GCA_018400075.1 + html chainNet