49566dc7263cab04bca529355999e4a4e7acfa78
angie
  Tue Jul 6 10:19:05 2021 -0700
Update to latest Nextstrain clade coloring.

diff --git src/hg/hgPhyloPlace/treeToAuspiceJson.c src/hg/hgPhyloPlace/treeToAuspiceJson.c
index e94b5c3..4e206de 100644
--- src/hg/hgPhyloPlace/treeToAuspiceJson.c
+++ src/hg/hgPhyloPlace/treeToAuspiceJson.c
@@ -26,36 +26,42 @@
 int sampleCount = slCount(subtreeUserSampleIds);
 if (sampleCount > 10)
     fprintf(outF, " and %d other uploaded samples", sampleCount - 1);
 else
     {
     struct slName *sln;
     for (sln = subtreeUserSampleIds->next;  sln != NULL;  sln = sln->next)
         fprintf(outF, ", %s", sln->name);
     }
 fputs("\", "
       "\"panels\": [ \"tree\"] , "
       "\"colorings\": [ "
       "  { \"key\": \"pango_lineage\", "
       "    \"title\": \"Pango lineage\", \"type\": \"categorical\" },"
       "  { \"key\": \"Nextstrain_clade\","
-      "    \"scale\": [ [ \"19B\", \"#EC676D\" ], [ \"19A\", \"#F79E43\" ],"
-      "        [ \"20A\", \"#B6D77A\" ], [ \"20C\", \"#8FD4ED\" ],"
-      "        [ \"20B\", \"#A692C3\" ], [ \"20D\", \"#8020A0\" ],"
-      "        [ \"20E (EU1)\", \"#44CC44\" ], [ \"20F\", \"#8822AA\" ],"
-      "        [ \"20G\", \"#8888FF\" ], [ \"20H/501Y.V2\", \"#6666FF\" ],"
-      "        [ \"20I/501Y.V1\", \"#CC44EE\" ], [ \"20A.EU2\", \"#448844\"  ], "
+      "    \"scale\": [ "
+      "        [ \"20H (Beta, V2)\", \"#3F47C9\" ],"
+      "        [ \"20I (Alpha, V1)\", \"#4274CE\" ],"
+      "        [ \"20J (Gamma, V3)\", \"#4F97BB\" ],"
+      "        [ \"21A (Delta)\", \"#64AC99\" ],"
+      "        [ \"21B (Kappa)\", \"#7EB976\" ],"
+      "        [ \"21C (Epsilon)\", \"#9EBE5A\" ],"
+      "        [ \"21D (Eta)\", \"#BEBB48\" ],"
+      "        [ \"21E (Theta)\", \"#D9AE3E\" ],"
+      "        [ \"21F (Iota)\", \"#E69036\" ],"
+      "        [ \"21G (Lambda)\", \"#E35F2D\" ],"
+      "        [ \"21H\", \"#DB2823\" ],"
       "        [ \"uploaded sample\", \"#FF0000\" ] ],"
       "    \"title\": \"Nextstrain Clade\", \"type\": \"categorical\" },"
       , outF);
 if (sameString(source, "GISAID"))
     fputs("  { \"key\": \"GISAID_clade\","
       "    \"scale\": [ [ \"S\", \"#EC676D\" ], [ \"L\", \"#F79E43\" ], [ \"O\", \"#F9D136\" ],"
       "        [ \"V\", \"#FAEA95\" ], [ \"G\", \"#B6D77A\" ], [ \"GH\", \"#8FD4ED\" ],"
       "        [ \"GR\", \"#A692C3\" ] ],"
       "    \"title\": \"GISAID Clade\", \"type\": \"categorical\" },"
           , outF);
 fprintf(outF, "  { \"key\": \"userOrOld\", "
         "    \"scale\": [ [ \"uploaded sample\", \"#CC0000\"] , [ \"%s\", \"#000000\"] ],"
         "    \"title\": \"Sample type\", \"type\": \"categorical\" },"
         "  {\"key\": \"gt\", \"title\": \"Genotype\", \"type\": \"categorical\"},"
         "  {\"key\": \"country\", \"title\": \"Country\", \"type\": \"categorical\"}"