3127589facd0998822593cc31527a70233c67164
lrnassar
  Wed Jul 14 16:10:04 2021 -0700
Moving all qateam crons to the kent src tree qa utils. They are now all called from the bin. No RM.

diff --git src/utils/qa/makefile src/utils/qa/makefile
index 0d00f85..e4ea2d5 100644
--- src/utils/qa/makefile
+++ src/utils/qa/makefile
@@ -1,54 +1,58 @@
 kentSrc = ../..
 include ../../inc/common.mk
 # ${SCRIPTS} is ${HOME}/bin/scripts (defined in kent/src/inc/common.mk)
 # to install in /cluster/bin/scripts/, run (in this directory):
 # make SCRIPTS=/cluster/bin/scripts
 
 install:
 	@echo Reminder: is your sandbox up to date?
 	cp -p --remove-destination 2bitCompare             ${SCRIPTS}
 	cp -p --remove-destination activeGenbank.csh       ${SCRIPTS}
 	cp -p --remove-destination alertBqueue.csh         ${SCRIPTS}
 	cp -p --remove-destination allowTraffic.csh        ${SCRIPTS}
+	cp -p --remove-destination assemblyStatsCron.py    ${SCRIPTS}
+	cp -p --remove-destination assemblyStatsCronSaveStats.py ${SCRIPTS}
 	cp -p --remove-destination backupCentral.csh       ${SCRIPTS}
 	cp -p --remove-destination bamToBedGraph.csh       ${SCRIPTS}
 	cp -p --remove-destination bamToBigWig.csh         ${SCRIPTS}
 	cp -p --remove-destination bigPush.sh              ${SCRIPTS}
 	cp -p --remove-destination blatPing.csh            ${SCRIPTS}
 	cp -p --remove-destination browserUsage.csh        ${SCRIPTS}
 	cp -p --remove-destination catchBot.csh            ${SCRIPTS}
 	cp -p --remove-destination chain.csh               ${SCRIPTS}
 	cp -p --remove-destination chain2.csh              ${SCRIPTS}
 	cp -p --remove-destination chainNetTrio.csh        ${SCRIPTS}
 	cp -p --remove-destination checkAllStaticLinks.csh ${SCRIPTS}
 	cp -p --remove-destination checkBOT.csh            ${SCRIPTS}
 	cp -p --remove-destination checkCoverage.csh       ${SCRIPTS}
 	cp -p --remove-destination checkEncodeRegions.csh  ${SCRIPTS}
 	cp -p --remove-destination checkGbdbDiffs.csh      ${SCRIPTS}
 	cp -p --remove-destination checkGenomeMysql        ${SCRIPTS}
 	cp -p --remove-destination checkHitter.csh         ${SCRIPTS}
+	cp -p --remove-destination checkHTTPS              ${SCRIPTS}
 	cp -p --remove-destination checkMachineName.csh    ${SCRIPTS}
 	cp -p --remove-destination checkMetaData.csh       ${SCRIPTS}
 	cp -p --remove-destination checkMetaAday.csh       ${SCRIPTS}
 	cp -p --remove-destination checkOffend.csh         ${SCRIPTS}
 	cp -p --remove-destination checkPushedFiles.csh    ${SCRIPTS}
 	cp -p --remove-destination checkScaffoldGaps.csh   ${SCRIPTS}
 	cp -p --remove-destination checkStaticLinks.csh    ${SCRIPTS}
 	cp -p --remove-destination checkStoreUnits.csh     ${SCRIPTS}
 	cp -p --remove-destination checkSync.csh           ${SCRIPTS}
 	cp -p --remove-destination checkSyncAll.csh        ${SCRIPTS}
+	cp -p --remove-destination checkSyncAndMetaDataAll.py ${SCRIPTS}
 	cp -p --remove-destination checkTableStatus.csh    ${SCRIPTS}
 	cp -p --remove-destination checkTrackUiLinks.csh   ${SCRIPTS}
 	cp -p --remove-destination checkWigFiles.csh       ${SCRIPTS}
 	cp -p --remove-destination commTrio.csh            ${SCRIPTS}
 	cp -p --remove-destination compareHgFindSpecs.csh  ${SCRIPTS}
 	cp -p --remove-destination comparePublic.csh       ${SCRIPTS}
 	cp -p --remove-destination compareTableLists.csh   ${SCRIPTS}
 	cp -p --remove-destination compareTableToFile.csh  ${SCRIPTS}
 	cp -p --remove-destination compareTrackDbAll.csh   ${SCRIPTS}
 	cp -p --remove-destination compareTrackDbFast.csh  ${SCRIPTS}
 	cp -p --remove-destination compareTrackDbs.csh     ${SCRIPTS}
 	cp -p --remove-destination compareWholeColumn.csh  ${SCRIPTS}
 	cp -p --remove-destination compareWholeTable.csh   ${SCRIPTS}
 	cp -p --remove-destination copyExtSeqRows.csh      ${SCRIPTS}
 	cp -p --remove-destination copyHgcentral           ${SCRIPTS}
@@ -87,30 +91,31 @@
 	cp -p --remove-destination getMatrixLines.csh      ${SCRIPTS}
 	cp -p --remove-destination getMonthLastYear.csh    ${SCRIPTS}
 	cp -p --remove-destination getOrderKey.csh         ${SCRIPTS}
 	cp -p --remove-destination getPubHubContact.sh     ${SCRIPTS}
 	cp -p --remove-destination getRRdatabases.csh      ${SCRIPTS}
 	cp -p --remove-destination getRRdumpfile.csh       ${SCRIPTS}
 	cp -p --remove-destination getRRtableStatus.csh    ${SCRIPTS}
 	cp -p --remove-destination getRRtables.csh         ${SCRIPTS}
 	cp -p --remove-destination getTableSize.csh        ${SCRIPTS}
 	cp -p --remove-destination getTableStatus.csh      ${SCRIPTS}
 	cp -p --remove-destination getTrackName.csh        ${SCRIPTS}
 	cp -p --remove-destination getSplit.csh            ${SCRIPTS}
 	cp -p --remove-destination getVersion.csh          ${SCRIPTS}
 	cp -p --remove-destination getYield.csh            ${SCRIPTS}
 	cp -p --remove-destination graph.csh               ${SCRIPTS}
+	cp -p --remove-destination hubSearchUpdate         ${SCRIPTS}
 	cp -p --remove-destination igtc.csh                ${SCRIPTS}
 	cp -p --remove-destination idHitter.csh            ${SCRIPTS}
 	cp -p --remove-destination joinerBatchKeys.csh     ${SCRIPTS}
 	cp -p --remove-destination joinerBatchTimes.csh    ${SCRIPTS}
 	cp -p --remove-destination kgTables                ${SCRIPTS}
 	cp -p --remove-destination gsTables                ${SCRIPTS}
 	cp -p --remove-destination pbTables                ${SCRIPTS}
 	cp -p --remove-destination knownGene.csh           ${SCRIPTS}
 	cp -p --remove-destination linkCheckExclude        ${SCRIPTS}
 	cp -p --remove-destination makeCytoBandIdeo.csh    ${SCRIPTS}
 	cp -p --remove-destination makeFilledBlockBed.csh  ${SCRIPTS}
 	cp -p --remove-destination makeTouchCommands.csh   ${SCRIPTS}
 	cp -p --remove-destination makeUniProtFile.csh     ${SCRIPTS}
 	cp -p --remove-destination net.csh                 ${SCRIPTS}
 	cp -p --remove-destination proteins.csh            ${SCRIPTS}