87510802d69dfeccd7ae00b02cf66fe8074f0a70 max Mon Jul 19 03:59:13 2021 -0700 documenting local-only assemblies in gbib, refs #27865 diff --git src/product/ex.hg.conf src/product/ex.hg.conf index 223988f..2b56ae6 100644 --- src/product/ex.hg.conf +++ src/product/ex.hg.conf @@ -18,30 +18,34 @@ # if your MySQL system is configured for a different socket connection, # use the following variables to override the MySQL defaults: # db.socket=/var/lib/mysql/mysql.sock # db.port=3306 # *!# NOTE: the port override will only work when host is *not* localhost # when localhost is used, MySQL may connect via shared memory # connections and not via TCP/IP socket ports # slow-db is the name of a MySQL host to fallback to if a query failed # on db.host. This means that tables can be dropped from db.host as long as # they are present on slow-db. #slow-db.host=genome-mysql.soe.ucsc.edu #slow-db.user=genomep #slow-db.password=password +# If you have assemblies that exists only on this server but not at UCSC, they have to +# be declared here, so that the slow-db code does not try to find them on the +# genome-mysql.soe.ucsc.edu server +#slow-db.excludeDbs=myGenome,myGenome2 # If the slow-db host is far away (more than a few msecs), a table on db.host # with schema information of the slow-db databases will speed up most tracks. # The table is created with the command "makeTableList" and its name is # specified here. If you activate the command below, AND you also have a genome # assembly database on your local mirror that is not present on # genome-mysql.soe.ucsc.edu, then you will need to run the tool 'makeTableList # ' to make your genome usable. The table list is a pretty essential # tool to increase remote data access performance to genomes loaded from UCSC, # via slow-db and gbdbLoc1/2 (see below) and so it is assumed to be present. # The code does not know if a genome is local-only or local-and-UCSC, so the tableList # must be created for local databases if you use the showTableCache speedup. # showTableCache=tableList