Commits for hiram

8deb467d374bb1670ab6dcf127d566191df56ef8 Mon Aug 9 10:29:31 2021 -0700

update with 34 fungi, 10 mammals, 10 fish, 9 invertebrates, 6 birds, 4 vertebrate, 4 plants refs #23891
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 1, context: html, text, full: html, text

98365ec2d3f48f0df6ec73cbf95aee1c538171a9 Mon Aug 9 10:32:03 2021 -0700

update with 34 fungi, 10 mammals, 10 fish, 9 invertebrates, 6 birds, 4 vertebrate, 4 plants refs #23891
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 77, context: html, text, full: html, text

db7ba618f0d684d8fd44e837ad3ce7e66d111bb9 Tue Aug 10 10:43:17 2021 -0700

to help with difficulty of wrap-around genes on circular genomes refs #23891
- src/hg/utils/automation/cleanGenePredOverSized.pl - lines changed 58, context: html, text, full: html, text

dc84ca81ef20efb01d72785d65e9c6a73219e49d Tue Aug 10 10:46:36 2021 -0700

to help with difficulty of wrap-around genes on circular genomes refs #23891
- src/hg/utils/automation/cleanGenePredOverSized.pl - lines changed 3, context: html, text, full: html, text

453c6b15ef9c37431ec50e004cc30d550c78c4a3 Tue Aug 10 11:15:51 2021 -0700

command not needed, function is in genePredFilter
- src/hg/utils/automation/cleanGenePredOverSized.pl - lines changed 59, context: html, text, full: html, text

9dc979a8ee168053a113e76c8588ecdcb13a2730 Tue Aug 10 13:47:31 2021 -0700

adding 1 bird, fish, fungi, vertebrate, and 2 invertebrates, plants refs #23891
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 8, context: html, text, full: html, text

091bcab3da87d766f547a29353cce5b6d2791204 Tue Aug 10 17:58:39 2021 -0700

add 3 plants refs #23891
- src/hg/makeDb/doc/asmHubs/master.run.list - lines changed 3, context: html, text, full: html, text

dfc875cf50fb8f376023cf7ea9c224b71d8dd9bd Wed Aug 11 11:21:30 2021 -0700

adding 10 new genomes refs #23891
- src/hg/makeDb/doc/mammalsAsmHub/mammals.orderList.tsv - lines changed 14, context: html, text, full: html, text

5dc9c100d8653cf25b6fdc26d4565e5f440c29dc Wed Aug 11 14:17:09 2021 -0700

update with 35 new assemblies refs #27072
- src/hg/makeDb/doc/fungiAsmHub/fungi.orderList.tsv - lines changed 469, context: html, text, full: html, text

10fbc9ddee0b5e0ba7740bdad9ac7f6e95502dc7 Wed Aug 11 15:06:16 2021 -0700

adding 12 new assemblies refs #23891
- src/hg/makeDb/doc/fishAsmHub/fish.orderList.tsv - lines changed 25, context: html, text, full: html, text

c76a73ca8e50787bcec73c80a63618eca166edf0 Wed Aug 11 15:43:36 2021 -0700

adding 5 new assemblies refs #23891
- src/hg/makeDb/doc/vertebrateAsmHub/vertebrate.orderList.tsv - lines changed 5, context: html, text, full: html, text

9dd66185c2c7514131595f31615ac9afe2a6393f Wed Aug 11 16:10:17 2021 -0700

adding 7 new assemblies refs #23891
- src/hg/makeDb/doc/birdsAsmHub/birds.orderList.tsv - lines changed 13, context: html, text, full: html, text

29a00b93a02141b7835d2ab660723cff4a03b05a Thu Aug 12 11:16:13 2021 -0700

adding 11 new assemblies refs #23891
- src/hg/makeDb/doc/invertebrateAsmHub/invertebrate.orderList.tsv - lines changed 18, context: html, text, full: html, text

0177691f58a34bb75df032f96cce0899c1bddbe5 Thu Aug 12 12:04:07 2021 -0700

catch up nine new assemblies refs #23891
- src/hg/makeDb/doc/plantsAsmHub/plants.orderList.tsv - lines changed 37, context: html, text, full: html, text

90e55e6a1ce5183ab418ffe94f27bd5dcd7897ee Thu Aug 12 12:25:33 2021 -0700

ten assemblies have aged out refs #23891
- src/hg/makeDb/doc/legacyAsmHub/legacy.orderList.tsv - lines changed 10, context: html, text, full: html, text

7f64d7f557f0eb8d3d309aa6441db6cd1f108798 Thu Aug 12 15:13:58 2021 -0700

simple ordinary VCF display of the SpliceAi VCF files refs #27141
- src/hg/makeDb/trackDb/human/hg38/spliceAi.ra - lines changed 38, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 2, context: html, text, full: html, text