f8501a86bf35a3ce42d5f2532648ec8d11b84294 chmalee Mon Aug 2 13:18:56 2021 -0700 Get list of genbank databases up to date with what has been built, refs #27924 diff --git src/hg/makeDb/genbank/etc/rr.dbs src/hg/makeDb/genbank/etc/rr.dbs index 6353ffe..9bb73ac 100644 --- src/hg/makeDb/genbank/etc/rr.dbs +++ src/hg/makeDb/genbank/etc/rr.dbs @@ -1,48 +1,49 @@ ## # genome databases to update on the rr and euronode. # list has urgent databases at front, then the latest assembly for each org, # then all the other assemblies for org. Please keep this ordering! # # urgent databases hg38 hg19 mm39 mm10 rn6 +rn7 # # Most recent assembly for each org # ailMel1 allMis1 anoCar2 anoGam1 apiMel2 aplCal1 aptMan1 aquChr2 balAcu1 bisBis1 bosTau7 bosTau8 braFlo1 caeJap1 caePb2 caeRem3 calJac4 calMil1 -canFam3 +canFam5 cavPor3 cb3 ce11 cerSim1 chlSab2 choHof1 chrPic1 ci2 criGri1 criGriChoV1 danRer11 dasNov3 dipOrd1 dm6 dp3 @@ -53,57 +54,58 @@ droPer1 droSec1 droSim1 droVir2 droYak2 echTel2 equCab2 eriEur2 felCat8 fr3 gadMor1 galGal6 galVar1 gasAcu1 geoFor1 -gorGor5 +gorGor6 hetGla2 hg18 latCha1 loxAfr3 macEug2 macFas5 manPen1 melGal1 melUnd1 micMur2 mm9 monDom5 musFur1 myoLuc2 nanPar1 nasLar1 +neoSch1 nomLeu3 ochPri3 oreNil2 ornAna2 oryCun2 oryLat2 otoGar3 oviAri3 oviAri4 -panPan2 +panPan3 panTro6 papAnu2 papHam1 petMar3 ponAbe2 ponAbe3 priPac1 proCap1 pteVam1 rheMac8 rhiRox1 sacCer3 saiBol1 sarHar1 sorAra2 @@ -121,30 +123,32 @@ xenLae2 xenTro9 # # this is the beginning of the list of secondary assemblies # anoCar1 apiMel1 bosTau6 bosTau4 bosTau3 bosTau2 caePb1 caeRem2 calJac3 calJac1 +canFam4 +canFam3 canFam2 canFam1 cb1 ce10 ce6 ce4 ce2 ci1 danRer10 danRer7 danRer6 danRer5 danRer4 danRer3 dm3 @@ -155,45 +159,47 @@ droMoj1 droVir1 droYak1 echTel1 equCab1 eriEur1 felCat5 felCat4 felCat3 fr2 fr1 galGal5 galGal4 galGal3 galGal2 +gorGor5 gorGor4 gorGor3 hetGla1 hg17 hg16 micMur1 mm8 mm7 monDom4 monDom1 nomLeu2 nomLeu1 ochPri2 ornAna1 oviAri1 +panPan2 panPan1 panTro5 panTro4 panTro3 panTro2 panTro1 petMar2 petMar1 rheMac3 rn5 rn4 rn3 sacCer2 sacCer1 sorAra1