f8501a86bf35a3ce42d5f2532648ec8d11b84294 chmalee Mon Aug 2 13:18:56 2021 -0700 Get list of genbank databases up to date with what has been built, refs #27924 diff --git src/hg/makeDb/genbank/etc/rr.dbs src/hg/makeDb/genbank/etc/rr.dbs index 6353ffe..9bb73ac 100644 --- src/hg/makeDb/genbank/etc/rr.dbs +++ src/hg/makeDb/genbank/etc/rr.dbs @@ -1,210 +1,216 @@ ## # genome databases to update on the rr and euronode. # list has urgent databases at front, then the latest assembly for each org, # then all the other assemblies for org. Please keep this ordering! # # urgent databases hg38 hg19 mm39 mm10 rn6 +rn7 # # Most recent assembly for each org # ailMel1 allMis1 anoCar2 anoGam1 apiMel2 aplCal1 aptMan1 aquChr2 balAcu1 bisBis1 bosTau7 bosTau8 braFlo1 caeJap1 caePb2 caeRem3 calJac4 calMil1 -canFam3 +canFam5 cavPor3 cb3 ce11 cerSim1 chlSab2 choHof1 chrPic1 ci2 criGri1 criGriChoV1 danRer11 dasNov3 dipOrd1 dm6 dp3 droAna2 droEre1 droGri1 droMoj2 droPer1 droSec1 droSim1 droVir2 droYak2 echTel2 equCab2 eriEur2 felCat8 fr3 gadMor1 galGal6 galVar1 gasAcu1 geoFor1 -gorGor5 +gorGor6 hetGla2 hg18 latCha1 loxAfr3 macEug2 macFas5 manPen1 melGal1 melUnd1 micMur2 mm9 monDom5 musFur1 myoLuc2 nanPar1 nasLar1 +neoSch1 nomLeu3 ochPri3 oreNil2 ornAna2 oryCun2 oryLat2 otoGar3 oviAri3 oviAri4 -panPan2 +panPan3 panTro6 papAnu2 papHam1 petMar3 ponAbe2 ponAbe3 priPac1 proCap1 pteVam1 rheMac8 rhiRox1 sacCer3 saiBol1 sarHar1 sorAra2 speTri2 strPur2 susScr11 susScr3 taeGut2 tarSyr2 tetNig2 triMan1 tupBel1 turTru2 vicPac2 xenLae2 xenTro9 # # this is the beginning of the list of secondary assemblies # anoCar1 apiMel1 bosTau6 bosTau4 bosTau3 bosTau2 caePb1 caeRem2 calJac3 calJac1 +canFam4 +canFam3 canFam2 canFam1 cb1 ce10 ce6 ce4 ce2 ci1 danRer10 danRer7 danRer6 danRer5 danRer4 danRer3 dm3 dm2 dm1 dp2 droAna1 droMoj1 droVir1 droYak1 echTel1 equCab1 eriEur1 felCat5 felCat4 felCat3 fr2 fr1 galGal5 galGal4 galGal3 galGal2 +gorGor5 gorGor4 gorGor3 hetGla1 hg17 hg16 micMur1 mm8 mm7 monDom4 monDom1 nomLeu2 nomLeu1 ochPri2 ornAna1 oviAri1 +panPan2 panPan1 panTro5 panTro4 panTro3 panTro2 panTro1 petMar2 petMar1 rheMac3 rn5 rn4 rn3 sacCer2 sacCer1 sorAra1 strPur1 susScr2 taeGut1 tarSyr1 tetNig1 vicPac1 wuhCor1 xenTro7 xenTro3 xenTro2 xenTro1