9569314078469a67c56e832c06406f5d4984200e
gperez2
  Wed Aug 4 13:40:27 2021 -0700
Updating the cron to expect 3 table discrepancy due to the relatedTrack table in hg38, no RM

diff --git src/utils/qa/checkSyncAndMetaDataAll.py src/utils/qa/checkSyncAndMetaDataAll.py
index dbcedd5..6919894 100755
--- src/utils/qa/checkSyncAndMetaDataAll.py
+++ src/utils/qa/checkSyncAndMetaDataAll.py
@@ -6,30 +6,33 @@
 #Initialize list to hold assemblies with errors
 troubleDbs = []
 
 #Iterate through allDbs and run checkSync.csh comparing to hgw1
 for db in allDbs:
     checkSyncResults = get_ipython().getoutput(u"checkSync.csh '$db' hgw1 hgwbeta")
     if db == 'mm9':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'hg18':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     elif db == 'hg19':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  5 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
+    elif db == 'hg38':
+        if '  0 hgw1.only' not in str(checkSyncResults) and '  3 hgwbeta.only' not in str(checkSyncResults):
+            troubleDbs.append(db)
     else:
         if '  0 hgw1.only' not in str(checkSyncResults) and '  2 hgwbeta.only' not in str(checkSyncResults):
             troubleDbs.append(db)
     
 #Iterate through allDbs and run checkSync.csh comparing to hgw2, informing of discrepancies
 for db in allDbs:
     checkSyncResults = get_ipython().getoutput(u"checkSync.csh '$db' hgw2 hgwbeta")
     
     if db == 'mm9':
         if '  0 hgw1.only' not in str(checkSyncResults) and '  4 hgwbeta.only' not in str(checkSyncResults)             and db not in troubleDbs:
             get_ipython().system(u" echo There looks to be a discrepancy between hgw1 and hgw2 checkSync for: '$db'")
             get_ipython().system(u" echo Follow up with checkSync.csh '$db' hgw1 hgw2")
             get_ipython().system(u' echo')
             troubleDbs.append(db)
     elif db == 'hg18':