357825329da34addd845542d78cf3686b0839c1a
max
  Mon Aug 9 03:47:05 2021 -0700
adding gtex coverage trackdb, documentation still missing waiting for feedback from Gtex portal, refs #27964

diff --git src/hg/makeDb/trackDb/human/gtexCov.ra src/hg/makeDb/trackDb/human/gtexCov.ra
new file mode 100644
index 0000000..e201e97
--- /dev/null
+++ src/hg/makeDb/trackDb/human/gtexCov.ra
@@ -0,0 +1,333 @@
+track gtexCov
+shortLabel GTEx RNA-Seq Coverage
+longLabel GTEx V8 RNA-Seq Read Coverage by Tissue
+group expression
+priority 10.20
+type bigWig
+autoScale on
+compositeTrack on
+
+  track gtexCovAdiposeSubcutaneous
+  parent gtexCov
+  shortLabel Adip Subcut
+  longLabel Adipose Subcutaneous
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0326-SM-3MJGV.Adipose_Subcutaneous.RNAseq.bw
+
+  track gtexCovAdiposeVisceralOmentum
+  parent gtexCov
+  shortLabel Adip Visc Om
+  longLabel Adipose Visceral Omentum
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14BMU-0626-SM-73KZ6.Adipose_Visceral_Omentum.RNAseq.bw
+
+  track gtexCovAdrenalGland
+  parent gtexCov
+  shortLabel Adren Gland
+  longLabel Adrenal Gland
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0126-SM-4VBRL.Adrenal_Gland.RNAseq.bw
+
+  track gtexCovArteryAorta
+  parent gtexCov
+  shortLabel Artery Aorta
+  longLabel Artery Aorta
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-WYVS-0426-SM-4ONDL.Artery_Aorta.RNAseq.bw
+
+  track gtexCovArteryCoronary
+  parent gtexCov
+  shortLabel Artery Coron
+  longLabel Artery Coronary
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1GMR3-0626-SM-9WYT3.Artery_Coronary.RNAseq.bw
+
+  track gtexCovArteryTibial
+  parent gtexCov
+  shortLabel Artery Tibia
+  longLabel Artery Tibial
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-XPT6-2226-SM-4B66R.Artery_Tibial.RNAseq.bw
+
+  track gtexCovBladder
+  parent gtexCov
+  shortLabel Bladder
+  longLabel Bladder
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-S3XE-1226-SM-4AD4L.Bladder.RNAseq.bw
+
+  track gtexCovBrainAmygdala
+  parent gtexCov
+  shortLabel Brain Amygd
+  longLabel Brain Amygdala
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R4A-SM-32PLT.Brain_Amygdala.RNAseq.bw
+
+  track gtexCovBrainAnteriorcingulatecortexBA24
+  parent gtexCov
+  shortLabel Brain Ant cin cort
+  longLabel Brain Anterior cingulate cortex BA24
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PN4-0011-R3b-SM-686ZU.Brain_Anterior_cingulate_cortex_BA24.RNAseq.bw
+
+  track gtexCovBrainCaudatebasalganglia
+  parent gtexCov
+  shortLabel Brain Caud bas gangl
+  longLabel Brain Caudate basal ganglia
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HGF4-0011-R5b-SM-CM2ST.Brain_Caudate_basal_ganglia.RNAseq.bw
+
+  track gtexCovBrainCerebellarHemisphere
+  parent gtexCov
+  shortLabel Brain Cereb Hemisph
+  longLabel Brain Cerebellar Hemisphere
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13X6J-0011-R11a-SM-5P9HE.Brain_Cerebellar_Hemisphere.RNAseq.bw
+
+  track gtexCovBrainCerebellum
+  parent gtexCov
+  shortLabel Brain Cereb
+  longLabel Brain Cerebellum
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-145MH-2926-SM-5Q5D2.Brain_Cerebellum.RNAseq.bw
+
+  track gtexCovBrainCortex
+  parent gtexCov
+  shortLabel Brain Cortex
+  longLabel Brain Cortex
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-UTHO-3026-SM-3GAFB.Brain_Cortex.RNAseq.bw
+
+  track gtexCovBrainFrontalCortexBA9
+  parent gtexCov
+  shortLabel Brain Front Cortex
+  longLabel Brain Frontal Cortex BA9
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R10A-SM-32PM2.Brain_Frontal_Cortex_BA9.RNAseq.bw
+
+  track gtexCovBrainHippocampus
+  parent gtexCov
+  shortLabel Brain Hippocamp
+  longLabel Brain Hippocampus
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HSKV-0011-R1b-SM-CMKH7.Brain_Hippocampus.RNAseq.bw
+
+  track gtexCovBrainHypothalamus
+  parent gtexCov
+  shortLabel Brain Hypothal
+  longLabel Brain Hypothalamus
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-0011-R8A-SM-32PLM.Brain_Hypothalamus.RNAseq.bw
+
+  track gtexCovBrainNucleusaccumbensbasalganglia
+  parent gtexCov
+  shortLabel Brain Nucl acc bas gang
+  longLabel Brain Nucleus accumbens basal ganglia
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14BIN-0011-R6a-SM-5S2RH.Brain_Nucleus_accumbens_basal_ganglia.RNAseq.bw
+
+  track gtexCovBrainPutamenbasalganglia
+  parent gtexCov
+  shortLabel Brain Put bas gang
+  longLabel Brain Putamen basal ganglia
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HFI6-0011-R7b-SM-CM2SS.Brain_Putamen_basal_ganglia.RNAseq.bw
+
+  track gtexCovBrainSpinalcordcervicalc-1
+  parent gtexCov
+  shortLabel Brain Spinal cord cerv
+  longLabel Brain Spinal cord cervical c-1
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-YFC4-0011-R9a-SM-4SOK4.Brain_Spinal_cord_cervical_c-1.RNAseq.bw
+
+  track gtexCovBrainSubstantianigra
+  parent gtexCov
+  shortLabel Brain Subst nigr
+  longLabel Brain Substantia nigra
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Z93S-0011-R2a-SM-4RGNG.Brain_Substantia_nigra.RNAseq.bw
+
+  track gtexCovBreastMammaryTissue
+  parent gtexCov
+  shortLabel Breast Mammary
+  longLabel Breast Mammary Tissue
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZT9W-2026-SM-51MRA.Breast_Mammary_Tissue.RNAseq.bw
+
+  track gtexCovCellsCulturedfibroblasts
+  parent gtexCov
+  shortLabel Cells fibrobl cult
+  longLabel Cells Cultured fibroblasts
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-117XS-0008-SM-5Q5DQ.Cells_Cultured_fibroblasts.RNAseq.bw
+
+  track gtexCovCellsEBV-transformedlymphocytes
+  parent gtexCov
+  shortLabel Cells EBV lymphoc
+  longLabel Cells EBV-transformed lymphocytes
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1122O-0003-SM-5Q5DL.Cells_EBV-transformed_lymphocytes.RNAseq.bw
+
+  track gtexCovCervixEctocervix
+  parent gtexCov
+  shortLabel Cervix Ectocerv
+  longLabel Cervix Ectocervix
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-S341-1126-SM-4AD6T.Cervix_Ectocervix.RNAseq.bw
+
+  track gtexCovCervixEndocervix
+  parent gtexCov
+  shortLabel Cervix Endocerv
+  longLabel Cervix Endocervix
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZPIC-1326-SM-DO91Y.Cervix_Endocervix.RNAseq.bw
+
+  track gtexCovColonSigmoid
+  parent gtexCov
+  shortLabel Colon Sigmoid
+  longLabel Colon Sigmoid
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1KXAM-1926-SM-D3LAG.Colon_Sigmoid.RNAseq.bw
+
+  track gtexCovColonTransverse
+  parent gtexCov
+  shortLabel Colon Transverse
+  longLabel Colon Transverse
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1IDJC-1326-SM-CL53H.Colon_Transverse.RNAseq.bw
+
+  track gtexCovEsophagusGastroesophagealJunction
+  parent gtexCov
+  shortLabel Esoph Gastroes Junc
+  longLabel Esophagus Gastroesophageal Junction
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1I1GU-1226-SM-A9SKT.Esophagus_Gastroesophageal_Junction.RNAseq.bw
+
+  track gtexCovEsophagusMucosa
+  parent gtexCov
+  shortLabel Esoph Mucosa
+  longLabel Esophagus Mucosa
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-11NSD-1126-SM-5N9BQ.Esophagus_Mucosa.RNAseq.bw
+
+  track gtexCovEsophagusMuscularis
+  parent gtexCov
+  shortLabel Esoph Muscularis
+  longLabel Esophagus Muscularis
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-0726-SM-73KVL.Esophagus_Muscularis.RNAseq.bw
+
+  track gtexCovFallopianTube
+  parent gtexCov
+  shortLabel Fallopian Tube
+  longLabel Fallopian Tube
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-OHPK-2326-SM-3MJH2.Fallopian_Tube.RNAseq.bw
+
+  track gtexCovHeartAtrialAppendage
+  parent gtexCov
+  shortLabel Heart Atr Append
+  longLabel Heart Atrial Appendage
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13S86-0326-SM-5SI6K.Heart_Atrial_Appendage.RNAseq.bw
+
+  track gtexCovHeartLeftVentricle
+  parent gtexCov
+  shortLabel Heart Left Ventr
+  longLabel Heart Left Ventricle
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0926-SM-2HMJU.Heart_Left_Ventricle.RNAseq.bw
+
+  track gtexCovKidneyCortex
+  parent gtexCov
+  shortLabel Kidney Cortex
+  longLabel Kidney Cortex
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-13OVI-1126-SM-5KLZF.Kidney_Cortex.RNAseq.bw
+
+  track gtexCovKidneyMedulla
+  parent gtexCov
+  shortLabel Kidney Medulla
+  longLabel Kidney Medulla
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-T5JC-1626-SM-EZ6KW.Kidney_Medulla.RNAseq.bw
+
+  track gtexCovLiver
+  parent gtexCov
+  shortLabel Liver
+  longLabel Liver
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-0426-SM-4VBRO.Liver.RNAseq.bw
+
+  track gtexCovLung
+  parent gtexCov
+  shortLabel Lung
+  longLabel Lung
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5V5-0826-SM-4VBQD.Lung.RNAseq.bw
+
+  track gtexCovMinorSalivaryGland
+  parent gtexCov
+  shortLabel Minor Saliv Gland
+  longLabel Minor Salivary Gland
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y5LM-1826-SM-4VDT9.Minor_Salivary_Gland.RNAseq.bw
+
+  track gtexCovMuscleSkeletal
+  parent gtexCov
+  shortLabel Muscle Skeletal
+  longLabel Muscle Skeletal
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-0626-SM-2HMIV.Muscle_Skeletal.RNAseq.bw
+
+  track gtexCovNerveTibial
+  parent gtexCov
+  shortLabel Nerve Tibial
+  longLabel Nerve Tibial
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-TML8-1626-SM-32QOO.Nerve_Tibial.RNAseq.bw
+
+  track gtexCovOvary
+  parent gtexCov
+  shortLabel Ovary
+  longLabel Ovary
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-ZVT2-0326-SM-5E44G.Ovary.RNAseq.bw
+
+  track gtexCovPancreas
+  parent gtexCov
+  shortLabel Pancreas
+  longLabel Pancreas
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1H1E6-0826-SM-9WG83.Pancreas.RNAseq.bw
+
+  track gtexCovPituitary
+  parent gtexCov
+  shortLabel Pituitary
+  longLabel Pituitary
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-Y111-2926-SM-4TT25.Pituitary.RNAseq.bw
+
+  track gtexCovProstate
+  parent gtexCov
+  shortLabel Prostate
+  longLabel Prostate
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14DAR-1026-SM-73KV3.Prostate.RNAseq.bw
+
+  track gtexCovSkinNotSunExposedSuprapubic
+  parent gtexCov
+  shortLabel Skin not sun exp
+  longLabel Skin Not Sun Exposed Suprapubic
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JN76-0626-SM-CKZOQ.Skin_Not_Sun_Exposed_Suprapubic.RNAseq.bw
+
+  track gtexCovSkinSunExposedLowerleg
+  parent gtexCov
+  shortLabel Skin sun exp
+  longLabel Skin Sun Exposed Lower leg
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1C475-1826-SM-73KWA.Skin_Sun_Exposed_Lower_leg.RNAseq.bw
+
+  track gtexCovSmallIntestineTerminalIleum
+  parent gtexCov
+  shortLabel Small Intestine
+  longLabel Small Intestine Terminal Ileum
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1PIEJ-1526-SM-E6CP8.Small_Intestine_Terminal_Ileum.RNAseq.bw
+
+  track gtexCovSpleen
+  parent gtexCov
+  shortLabel Spleen
+  longLabel Spleen
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-14PKU-0526-SM-6871A.Spleen.RNAseq.bw
+
+  track gtexCovStomach
+  parent gtexCov
+  shortLabel Stomach
+  longLabel Stomach
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-NFK9-1526-SM-3LK7B.Stomach.RNAseq.bw
+
+  track gtexCovTestis
+  parent gtexCov
+  shortLabel Testis
+  longLabel Testis
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1JKYN-1026-SM-CGQG4.Testis.RNAseq.bw
+
+  track gtexCovThyroid
+  parent gtexCov
+  shortLabel Thyroid
+  longLabel Thyroid
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1HSGN-0726-SM-A9G2F.Thyroid.RNAseq.bw
+
+  track gtexCovUterus
+  parent gtexCov
+  shortLabel Uterus
+  longLabel Uterus
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1MA7W-1526-SM-DHXKS.Uterus.RNAseq.bw
+
+  track gtexCovVagina
+  parent gtexCov
+  shortLabel Vagina
+  longLabel Vagina
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1IDJU-1026-SM-AHZ2U.Vagina.RNAseq.bw
+
+  track gtexCovWholeBlood
+  parent gtexCov
+  shortLabel Whole Blood
+  longLabel Whole Blood
+  bigDataUrl /gbdb/hg38/gtex/cov/GTEX-1LG7Z-0005-SM-DKPQ6.Whole_Blood.RNAseq.bw
+