49fafa484293682f56ca08a0d902d8366fc476f7
angie
  Thu Sep 2 17:43:32 2021 -0700
Link to client-side UShER implementation ShUShER.

diff --git src/hg/hgPhyloPlace/hgPhyloPlace.c src/hg/hgPhyloPlace/hgPhyloPlace.c
index 29c0c7d..2be55d5 100644
--- src/hg/hgPhyloPlace/hgPhyloPlace.c
+++ src/hg/hgPhyloPlace/hgPhyloPlace.c
@@ -210,31 +210,35 @@
      "The <a href='https://www.cdc.gov/amd/training/covid-19-gen-epi-toolkit.html' target=_blank>"
      "CDC COVID-19 Genomic Epidemiology Toolkit</a> now includes a training module for UShER!\n"
      "Module 3.3 includes a <a href='https://youtu.be/humQ1NyZOUM' target=_blank>video</a>, "
      "slides (<a href='https://www.cdc.gov/amd/pdf/slidesets/toolkit-module-3.3-usher.pdf' "
      "target=_blank>PDF</a>), and links to more resources.\n"
      "</p>"
      );
 puts("</div>");
 puts("</div>");
 puts("<div class='readableWidth'>");
 puts("  <div class='gbControl col-md-12'>");
 puts("<p><b>Note:</b> "
      "Please do not upload any files that contain "
      "<a href='https://en.wikipedia.org/wiki/Protected_health_information#United_States' "
      "target=_blank>Protected Health Information (PHI)</a> "
-     "to UCSC.</p>\n"
+     "to UCSC.\n"
+     "If even virus sequence files must remain local on your computer, then you can try "
+     "<a href='https://shusher.gi.ucsc.edu/' target=_blank>ShUShER</a> "
+     "which runs entirely in your web browser so that no files leave your computer."
+     "</p>\n"
      "<p>We do not store your information "
      "(aside from the information necessary to display results)\n"
      "and will not share it with others unless you choose to share your Genome Browser view.</p>\n"
      "<p>In order to enable rapid progress in SARS-CoV-2 research and genomic contact tracing,\n"
      "please share your SARS-CoV-2 sequences by submitting them to an "
      "<a href='https://ncbiinsights.ncbi.nlm.nih.gov/2020/08/17/insdc-covid-data-sharing/' "
      "target=_blank>INSDC</a> member institution\n"
      "(<a href='https://submit.ncbi.nlm.nih.gov/sarscov2/' target=_blank>NCBI</a>,\n"
      "<a href='https://www.covid19dataportal.org/submit-data' target=_blank>EMBL-EBI</a>\n"
      "or <a href='https://www.ddbj.nig.ac.jp/ddbj/websub.html' target=_blank>DDBJ</a>)\n"
      "and <a href='https://www.gisaid.org/' target=_blank>GISAID</a>.\n"
      "</p>\n");
 puts("</div>");
 puts("  </div>");
 puts("  <div class='gbControl col-md-12'>");