dcdb342ff4f255973940339af65b1b7266684ef9 angie Thu Sep 2 17:45:48 2021 -0700 Add DRC -> Democratic Republic of the Congo. diff --git src/hg/utils/otto/sarscov2phylo/gisaidNameToCountry.pl src/hg/utils/otto/sarscov2phylo/gisaidNameToCountry.pl index a5c6cb2..25bcef4 100755 --- src/hg/utils/otto/sarscov2phylo/gisaidNameToCountry.pl +++ src/hg/utils/otto/sarscov2phylo/gisaidNameToCountry.pl @@ -1,81 +1,82 @@ #!/usr/bin/env perl use warnings; use strict; my %fixup = ( 'ITA' => 'Italy', + 'DRC' => 'Democratic Republic of the Congo', 'FRANCE' => 'France', 'FRance' => 'France', 'MAlta' => 'Malta', 'PAKISTAN' => 'Pakistan', 'BurkinaFaso' => 'Burkina Faso', 'HongKong' => 'Hong Kong', 'SouthAfrica' => 'South Africa', 'USA-IN' => 'USA', 'Anhui' => 'China', 'Beijing' => 'China', 'Changde' => 'China', 'Changzhou' => 'China', 'Chongqing' => 'China', 'Foshan' => 'China', 'Fujian' => 'China', 'Fuzhou' => 'China', 'Gansu' => 'China', 'Ganzhou' => 'China', 'Guangdong' => 'China', 'Guangxi' => 'China', 'Guangzhou' => 'China', 'Hangzhou' => 'China', 'Harbin' => 'China', 'Hebei' => 'China', 'Heilongjiang' => 'China', 'Henan' => 'China', 'Hunan' => 'China', 'Jian' => 'China', 'Jiangsu' => 'China', 'Jiangxi' => 'China', 'Jingzhou' => 'China', 'Kashgar' => 'China', 'Jiujiang' => 'China', 'Liaoning' => 'China', 'Lishui' => 'China', 'Lu\'an' => 'China', 'Meizhou' => 'China', 'Nan Chang' => 'China', 'Nanchang' => 'China', 'Pingxiang' => 'China', 'Qingdao' => 'China', 'Shaanxi' => 'China', 'Shandong' => 'China', 'Shanghai' => 'China', 'Shangrao' => 'China', 'Shaoxing' => 'China', 'Shenzhen' => 'China', 'Shulan' => 'China', 'Sichuan' => 'China', 'Tianmen' => 'China', 'Urumqi' => 'China', 'Weifang' => 'China', 'Wuhan' => 'China', 'Xinyu' => 'China', 'Yichun' => 'China', 'Yingtan' => 'China', 'Yunnan' => 'China', 'Zhejiang' => 'China', ); while (<>) { s/[\r\n]+$//; my $wholeName = $_; $wholeName =~ s/[ ',()]//g; if (/^([a-z ]+\/|North America\/)?([A-Z][a-zA-Z '_-]+)\//) { my $country = $2; if (exists $fixup{$country}) { $country = $fixup{$country}; } print "$wholeName\t$country\n"; } else { print "$wholeName\t?\n"; } }