66b1030888d2fbc504ed737350256b20442367c7
braney
  Fri Sep 3 10:43:22 2021 -0700
ongoing work on knownGene automation

diff --git src/hg/utils/otto/knownGene/buildMafGene.sh src/hg/utils/otto/knownGene/buildMafGene.sh
index 781a271..330f826 100755
--- src/hg/utils/otto/knownGene/buildMafGene.sh
+++ src/hg/utils/otto/knownGene/buildMafGene.sh
@@ -1,18 +1,20 @@
 #!/bin/sh -ex
 cd $dir
 {
+. ./buildEnv.sh
+
 if test "$multizDir" == ""
 then
 echo "Must set multizDir to directory with multiz files in it"
 fi
 
 if test "$mz" == ""
 then
 echo "Must set mz to name of multiz track"
 fi
 
 mkdir -p $multizDir/mafGene.knownGene${GENCODE_VERSION}
 cd $multizDir/mafGene.knownGene${GENCODE_VERSION}
 
 cat $multizDir/species.list | tr '[ ]' '[\n]' > order.list