078373be43b3261bd2d3b282e15c11599cd45964
dschmelt
  Thu Sep 2 12:02:34 2021 -0700
Adding info to makeDoc refs #27061

diff --git src/hg/makeDb/doc/hg19.txt src/hg/makeDb/doc/hg19.txt
index 3eb0a48..fd309730 100644
--- src/hg/makeDb/doc/hg19.txt
+++ src/hg/makeDb/doc/hg19.txt
@@ -1503,31 +1503,31 @@
 /cluster/bin/x86_64/blat -ooc=/scratch/data/hg19/11.ooc \
     /scratch/data/hg19/hg19.2bit:$partSpec \
 	../split/${query} -stepSize=5 $tmpFile.psl
 /bin/rm -f $result
 mv $tmpFile.psl $result
 /bin/rm -f $tmpFile.psl
 '_EOF_'
     # << happy emacs
     chmod +x runOne.csh
 
     gensub2 hg19.list sts.list template jobList
     #	these jobs run quickly, allow only 100 at a time
     para -maxJob=100 create jobList
 # 6486 jobs in batch
     para try ... check ... push ... etc
-
+# Completed: 6486 of 6486 jobs
 # CPU time in finished jobs:       2206s      36.77m     0.61h    0.03d  0.000 y
 # IO & Wait Time:                 16505s     275.08m     4.58h    0.19d  0.001 y
 # Average job time:                   3s       0.05m     0.00h    0.00d
 # Longest finished job:              21s       0.35m     0.01h    0.00d
 # Submission to last job:           601s      10.02m     0.17h    0.01d
 
     # Compile sts sequence results
     ssh hgwdev
     cd /hive/data/genomes/hg19/bed/sts/run
     time pslSort dirs raw.psl temp psl/chr*
     #	8366 files in 89 dirs
     #	Got 8366 files 91 files per mid file
     #	real    8m50.714s
     #	-rw-rw-r--  1 810438277 May  1 11:45 raw.psl
     cd /hive/data/genomes/hg19/bed/sts/run.randoms
@@ -34614,31 +34614,31 @@
     cat fb.gorGor6.chainSynHg19Link.txt
     2726237067 bases of 2999027915 (90.904%) in intersection
 
     time (doRecipBest.pl -load -workhorse=hgwdev -buildDir=`pwd` gorGor6 hg19) > rbest.log 2>&1 &
     # real    70m15.001s
 
     sed -e 's/^/    # /;' fb.gorGor6.chainRBest.Hg19.txt
     # 2694784811 bases of 2999027915 (89.855%) in intersection
 
 ##############################################################################
 
 # JASPAR Track integration by Daniel 8/20/21
     cd ~/kent/src/hg/makeDb/trackDb 
     v human/jaspar.ra 
     curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/hg19/trackDb.txt >> human/jaspar.ra 
-    cg /hive/data/genomes/hg19/bed
+    cd /hive/data/genomes/hg19/bed
     mkdir jaspar
     cd jaspar
     wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg19/JASPAR2018_hg19_all_chr.bb
     wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg19.bb
     mv JASPAR2020_hg19.bb JASPAR2020.bb
     mv JASPAR2018_hg19_all_chr.bb JASPAR2018.bb
     cd /gbdb/hg19
     mkdir jaspar
     cd jaspar
     ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2018.bb .
     ln -s /hive/data/genomes/hg19/bed/jaspar/JASPAR2020.bb .
     v human/jaspar.html  
     curl http://expdata.cmmt.ubc.ca/JASPAR/UCSC_tracks/JASPAR2018_TFBS_help.html >> human/jaspar.html 
 
 ###############################################################################