73b463410df5d0e73fa068c2eb66df33cfceb6ee dschmelt Fri Aug 20 15:57:37 2021 -0700 Fixing makeDoc location as requested and short html edit refs #27061 diff --git src/hg/makeDb/doc/hg38/hg38.txt src/hg/makeDb/doc/hg38/hg38.txt index 262e14f..03a1488 100644 --- src/hg/makeDb/doc/hg38/hg38.txt +++ src/hg/makeDb/doc/hg38/hg38.txt @@ -6950,26 +6950,15 @@ #user 9m1.624s #sys 0m20.863s hgLoadChain hg38 -tIndex chainHg19ReMap remap.hg38.hg19.chain #Loading 5315 chains into hg38.chainHg19ReMap time axtChain -psl -linearGap=medium -verbose=0 remap.hg38.hg19.psl \ /hive/data/genomes/hg38/hg38.2bit /hive/data/genomes/hg19/hg19.2bit \ remap.axtChain.hg38.hg19.chain #real 2m26.333s #user 2m4.237s #sys 0m22.071s hgLoadChain hg38 -tIndex chainHg19ReMapAxtChain remap.axtChain.hg38.hg19.chain #Loading 2115 chains into hg38.chainHg19ReMapAxtChain ######################################################################### - -# JASPAR Track integration by Daniel 8/20/21 - cd /gbdb/hg38 - mkdir jaspar - cd jaspar - wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/hg38/JASPAR2018_hg38_all_chr.bb - wget http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2020/JASPAR2020_hg38.bb - mv JASPAR2020_hg38.bb JASPAR2020.bb - mv JASPAR2018_hg38_all_chr.bb JASPAR2018.bb - -###############################################################################i