73b463410df5d0e73fa068c2eb66df33cfceb6ee
dschmelt
  Fri Aug 20 15:57:37 2021 -0700
Fixing makeDoc location as requested and short html edit refs #27061

diff --git src/hg/makeDb/trackDb/human/jaspar.html src/hg/makeDb/trackDb/human/jaspar.html
index f77d7f5..0764aff 100644
--- src/hg/makeDb/trackDb/human/jaspar.html
+++ src/hg/makeDb/trackDb/human/jaspar.html
@@ -101,31 +101,31 @@
 </table>
 
 <h2>Methods</h2>
 <p>For each TF binding profile in the JASPAR CORE  collection,  genomes were scanned in parallel using the TFBS Perl module (Lenhard and Wasserman 2002) and FIMO (Grant, Bailey, and Noble 2011), as distributed within the MEME suite (version 4.11.2) (Bailey et al. 2009). For scanning genomes with the BioPerl TFBS module, we converted profiles to PWMs and kept matches with a relative score ≥ 0.8. For the FIMO scan, profiles were reformatted to MEME motifs and matches with a p-value &lt; 0.05 were kept. TFBS predictions that were not consistent between the two methods (TFBS Perl module and FIMO) were removed. The remaining TFBS predictions were converted to genome tracks and colored according to their FIMO p-value to allow for comparison of prediction confidence between different profiles.</p>
 <p>Please refer to the JASPAR 2018 manuscript for more details (citation below).</p>
 
 <h2>Data Access</h2>
 <ul>
 <li>Binding site predictions for all and individual TF profiles are available for download at <a href="http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/" target="_blank">http://expdata.cmmt.ubc.ca/JASPAR/downloads/UCSC_tracks/2018/</a>.</li>
 <li>Code and data used to create the UCSC tracks are available at <a href="https://github.com/wassermanlab/JASPAR-UCSC-tracks">https://github.com/wassermanlab/JASPAR-UCSC-tracks</a>.</li>
 <li>The underlying JASPAR motif data is available through the JASPAR website at <a href="http://jaspar.genereg.net" target="_blank">http://jaspar.genereg.net</a>.</li>
 </ul>
 <p> All data is freely available.</p>
 
 <h2>Genomes</h2>
-<p>The JASPAR group provides TFBS predictions for many additional species and genomes in their Public Hub:</p>
+<p>The JASPAR group provides TFBS predictions for many additional species and genomes in their <a href="../cgi-bin/hgHubConnect?hubSearchTerms=jaspar&hgHub_do_search=on">Public Hub</a>:</p>
 <table width="458" border="1">
   <tbody>
     <tr>
       <td><strong>Species</strong></td>
       <td><strong>Genome assembly versions</strong></td>
     </tr>
     <tr>
       <td width="200">Human</td>
       <td width="200">hg19, hg38</td>
     </tr>
     <tr>
       <td><em>Danio rerio</em></td>
       <td>danRer10</td>
     </tr>
     <tr>