bc1b5ba86e1748595027762a35c8f9a05d769a08
lrnassar
  Tue Aug 17 11:41:33 2021 -0700
Changing default CADD scores and adding a note to the desc page refs #28010

diff --git src/hg/makeDb/trackDb/human/cadd.ra src/hg/makeDb/trackDb/human/cadd.ra
index 0302798..b3cce4e 100644
--- src/hg/makeDb/trackDb/human/cadd.ra
+++ src/hg/makeDb/trackDb/human/cadd.ra
@@ -1,94 +1,100 @@
 track caddSuper
 shortLabel CADD
 longLabel CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions
 superTrack on hide
 type bed
 visibility hide
 group phenDis
 color 100,130,160
 
 track cadd
 shortLabel CADD
 longLabel CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)
 type bigWig
 compositeTrack on
 parent caddSuper
 visibility dense
 #maxWindowToQuery 500000
 group phenDis
 color 100,130,160
 html caddSuper
 maxWindowToDraw 10000000
 mouseOverFunction noAverage
 
         track caddA
         shortLabel Mutation: A
         longLabel CADD 1.6 Score: Mutation is A
         type bigWig
         parent cadd on
         visibility dense
         bigDataUrl /gbdb/$D/cadd/a.bw
         maxHeightPixels 128:20:8
-        viewLimits 0:30
+        viewLimits 10:50
         viewLimitsMax 0:100
 
         track caddC
         shortLabel Mutation: C
         longLabel CADD 1.6 Score: Mutation is C
         type bigWig
         parent cadd on
         visibility dense
         bigDataUrl /gbdb/$D/cadd/c.bw
         maxHeightPixels 128:20:8
-        viewLimits 0:30
+        viewLimits 10:50
         viewLimitsMax 0:100
 
         track caddG
         shortLabel Mutation: G
         longLabel CADD 1.6 Score: Mutation is G
         type bigWig
         parent cadd on
         visibility dense
         bigDataUrl /gbdb/$D/cadd/g.bw
         maxHeightPixels 128:20:8
-        viewLimits 0:30
+        viewLimits 10:50
         viewLimitsMax 0:100
 
         track caddT
         shortLabel Mutation: T
         longLabel CADD 1.6 Score: Mutation is T
         type bigWig
         parent cadd on
         visibility dense
         bigDataUrl /gbdb/$D/cadd/t.bw
         maxHeightPixels 128:20:8
-        viewLimits 0:30
+        viewLimits 10:50
         viewLimitsMax 0:100
 
 track caddIns
 shortLabel Insertions
 longLabel CADD 1.6 Score: Insertions - label is length of insertion
 type bigBed 9 +
 parent caddSuper
 visibility dense
 bigDataUrl /gbdb/$D/cadd/ins.bb
 mouseOver Mutation: $change CADD Phred score: $phred
 html caddSuper
-scoreFilterLimits 0:100
+filter.score 10:100
+filterByRange.score on
+filterLabel.score Show only items with PHRED scale score of
+filterLimits.score 0:100
 #maxWindowCoverage 40000
 #maxItems 100000
 #maxWindowToDraw 9000000
 
 track caddDel
 shortLabel Deletions
 longLabel CADD 1.6 Score: Deletions - label is length of deletion
 type bigBed 9 +
 parent caddSuper
 visibility dense
 bigDataUrl /gbdb/$D/cadd/del.bb
 mouseOver Mutation: $change CADD Phred score: $phred
 html caddSuper
-scoreFilterLimits 0:100
+filter.score 10:100
+filterByRange.score on
+filterLabel.score Show only items with PHRED scale score of
+filterLimits.score 0:100
 #maxWindowCoverage 40000
 #maxItems 100000
 #maxWindowToDraw 9000000