d8ac5e07aaace709a641bf14affbcd9d179c4096 max Fri Aug 20 06:35:28 2021 -0700 making GBIC work on Fedora 34, refs #27795 diff --git src/product/installer/browserSetup.sh src/product/installer/browserSetup.sh index 7b2fd53d..605cbb9 100755 --- src/product/installer/browserSetup.sh +++ src/product/installer/browserSetup.sh @@ -658,34 +658,41 @@ make #cd hg/htdocs #make doInstall destDir=$APACHDIR/htdocs FIND="find ." # dbTrash tool needed for trash cleaning } # redhat specific part of mysql and apache installation function installRedhat () { echo2 echo2 Installing EPEL, ghostscript, libpng waitKey # make sure we have and EPEL and ghostscript and rsync (not installed on vagrant boxes) # imagemagick is required for the session gallery yum -y update + + # Fedora doesn't have or need EPEL, however, it does not include chkconfig by default + if cat /etc/redhat-release | grep edora > /dev/null; then + yum -y install chkconfig + else yum -y install epel-release + fi + yum -y install ghostscript rsync ImageMagick R-core curl - # centos 7 and fedora 20 do not provide libpng by default + # centos 7 does not provide libpng by default if ldconfig -p | grep libpng12.so > /dev/null; then echo2 libpng12 found else yum -y install libpng12 fi # install apache if not installed yet if [ ! -f /usr/sbin/httpd ]; then echo2 echo2 Installing Apache and making it start on boot waitKey yum -y install httpd # start apache on boot chkconfig --level 2345 httpd on # there will be an error message that the apache @@ -761,30 +768,41 @@ # MySQL-python is required for hgGeneGraph # CentOS up to and including 7 default to python2, so MySQL-python is in the repos if yum list MySQL-python 2> /dev/null ; then yum -y install MySQL-python # Centos 8 defaults to python3 and it does not have a package MySQL-python anymore # So we install python2, the mysql libraries and fix up my_config.h manually # This is strange, but I was unable to find a different working solution. MariaDB does not have my_config.h else yum install -y python2 mysql-devel python2-devel wget gcc if [ -f /usr/include/mysql/my_config.h ]; then echo my_config.h found else wget https://raw.githubusercontent.com/paulfitz/mysql-connector-c/master/include/my_config.h -P /usr/include/mysql/ fi + + # this is very strange, but was necessary on Fedora https://github.com/DefectDojo/django-DefectDojo/issues/407 + sed '/st_mysql_options options;/a unsigned int reconnect;' /usr/include/mysql/mysql.h -i.bkp + + # fedora > 34 doesn't have any pip2 package anymore + if ! type "pip2" > /dev/null; then + wget https://bootstrap.pypa.io/pip/2.7/get-pip.py + python2 get-pip.py + mv /usr/bin/pip /usr/bin/pip2 + + fi pip2 install MySQL-python fi } # OSX specific setup of the installation function installOsx () { # check for xcode if [ -f /usr/bin/xcode-select 2> /dev/null > /dev/null ]; then echo2 Found XCode else echo2 echo2 'This installer has to compile the UCSC tools locally on OSX.' echo2 'Please install XCode from https://developer.apple.com/xcode/downloads/'