Commits for braney

v420_preview to v420_preview2 (2021-08-23 to 2021-08-30) v420

4ef472a0cd3441f7b6f490c8651b9975c5946830 Mon Aug 23 15:15:54 2021 -0700

• polishing up the VM27 release of knownGene
  • src/hg/makeDb/doc/ucscGenes/mm39.gencodeVM27.sh - lines changed 743, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/ReadMe.txt - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildKnown.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/copyFilesToAssembly.sh - lines changed 6, context: html, text, full: html, text

ea9b4c160de0350d5441efc6739cd3c304a12878 Tue Aug 24 16:05:54 2021 -0700

• starting on hg38 Gencode V38
  • src/hg/makeDb/doc/ucscGenes/hg38.gencodeV38.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 51, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/buildEnv.sh - lines changed 49, context: html, text, full: html, text
  • src/hg/utils/otto/knownGene/sample.buildEnv.sh - lines changed 49, context: html, text, full: html, text

c2fe1cd77b01ebcd593c8dd8e2dfd2ee0eb62cc2 Tue Aug 24 16:06:45 2021 -0700

• adding redmineWidget
  • src/hg/htdocs/redmineWidget.html - lines changed 27, context: html, text, full: html, text

a78324be2d472a1efd65f54b8006a3925e70ade7 Wed Aug 25 09:05:06 2021 -0700

• make goldenPath/help/hgGeneGraph.html executable
  • src/hg/htdocs/goldenPath/help/hgGeneGraph.html - lines changed 0, context: html, text, full: html, text (a binary file or whitespace-only change or file-permission change shows no diff)

9ec48c91786f9dfe13465405f11b98c2e7efe10c Wed Aug 25 14:53:25 2021 -0700

• take out text "Description and Page Index" from top of hgGene page
  • src/hg/hgGene/hgGene.c - lines changed 1, context: html, text, full: html, text

72eb33d9c6bc89f4a35e00efd6978c898e963e8a Wed Aug 25 16:37:15 2021 -0700

• added knownGeneV38 and a supertrack with knownGeneV36
  • src/hg/makeDb/trackDb/human/hg38/knownGene.alpha.ra - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg38/trackDb.ra - lines changed 4, context: html, text, full: html, text

c39cf7dd8ede5ad6f5dc1bc19e392d1c1b61248c Wed Aug 25 16:38:39 2021 -0700

• add knownGene archive super track
  • src/hg/makeDb/trackDb/human/hg38/oldKnownGene.ra - lines changed 33, context: html, text, full: html, text

c2e323af1cfff47a01e324fab96cfae2fb9a949f Mon Aug 30 09:13:00 2021 -0700

• add the redmine email widget to contacts.html
  • src/hg/htdocs/contacts.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/redmineWidget.html - lines changed 4, context: html, text, full: html, text