4023e99edfbcb1e936b98326d9f99f1650541bbd
kuhn
  Thu Aug 26 18:48:15 2021 -0700
added ref to blat paper

diff --git src/hg/hgBlat/hgBlat.c src/hg/hgBlat/hgBlat.c
index 74510ef..67ee438 100644
--- src/hg/hgBlat/hgBlat.c
+++ src/hg/hgBlat/hgBlat.c
@@ -1914,31 +1914,34 @@
 "BLAT to deliver high performance on a reasonably priced Linux box.\n"
 "The index is used to find areas of probable homology, which are then\n"
 "loaded into memory for a detailed alignment. Protein BLAT works in a similar\n"
 "manner, except with 4-mers rather than 11-mers.  The protein index takes a little\n"
 "more than 2 gigabytes.</P>\n"
 "<P>BLAT was written by <A HREF=\"mailto:kent@soe.ucsc.edu\">Jim Kent</A>.\n"
 "Like most of Jim's software, interactive use on this web server is free to all.\n"
 "Sources and executables to run batch jobs on your own server are available free\n"
 "for academic, personal, and non-profit purposes.  Non-exclusive commercial\n"
 "licenses are also available. See the \n"
 "<A HREF=\"http://www.kentinformatics.com\" TARGET=_blank>Kent Informatics</A>\n"
 "website for details.</P>\n"
 "\n"
 "<P>For more information on the graphical version of BLAT, click the Help \n"
 "button on the top menu bar");
-printf(" or see the Genome Browser <A HREF=\"../FAQ/FAQblat.html\">FAQ</A>. </P> \n");
+printf(" or see the Genome Browser <A HREF=\"../FAQ/FAQblat.html\">FAQ</A>. </P> \n"
+"<P>Kent WJ. <a href=\"http://www.genome.org/cgi/content/abstract/12/4/656\" \n"
+"target=_blank>BLAT - the BLAST-like alignment tool</a>. \n" 
+"Genome Res. 2002 Apr;12(4):656-64. PMID: 11932250</p>");
 
 }
 
 void fakeAskForSeqForm(char *organism, char *db)
 /* Put up a hidden form that asks for sequence.
  * Call self.... */
 {
 char *userSeq = NULL;
 char *type = NULL;
 char *sort = NULL;
 char *output = NULL;
 
 printf("<FORM ACTION=\"../cgi-bin/hgBlat\" METHOD=\"POST\" ENCTYPE=\"multipart/form-data\" NAME=\"mainForm\">\n");
 cartSaveSession(cart);
 printf("<INPUT TYPE=HIDDEN NAME=org VALUE=\"%s\">\n", organism);