Commits for braney

v421_preview2 to v421_base (2021-09-20 to 2021-09-27) v421

b638c1d328d8febc1d4cd8597b7cc358bebc39f3 Wed Sep 22 16:55:52 2021 -0700

• take out special handling of lrgTranscriptAli track in favor of the standard bigPsl routines
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 2, context: html, text, full: html, text
  • src/hg/hgc/hgc.c - lines changed 4, context: html, text, full: html, text

09a878c5030e368099828acb25bdc4ab8d2d46e8 Wed Sep 22 17:05:00 2021 -0700

• rename lrgBigPsl to lrgTranscriptAli as it once was
  • src/hg/makeDb/trackDb/human/trackDb.ra - lines changed 1, context: html, text, full: html, text

c9f4f4f59fa2576f5ec3bbd2b2886d3dc270f04e Wed Sep 22 19:02:17 2021 -0700

• switch the primary gene set on hg19 to V38lift37
  • src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra - lines changed 39, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 5, context: html, text, full: html, text

76d463f1dcd4e0f752497032b2790100684df4dd Wed Sep 22 19:04:47 2021 -0700

• add hg19 knownGene archive
  • src/hg/makeDb/trackDb/human/hg19/knownGeneArchive.ra - lines changed 42, context: html, text, full: html, text

60f24be747f18c670816b2e660dc1bb0ea8d3e6d Fri Sep 24 12:24:24 2021 -0700

• start using gencodeV38lift37 has primary gene set
  • src/hg/makeDb/trackDb/human/hg19/knownGene.alpha.ra - lines changed 1, context: html, text, full: html, text

27b46974c742bba0d60bf92f74d4e17f8d16bb72 Fri Sep 24 13:01:43 2021 -0700

• remove supurious endSection()
  • src/hg/hgc/bigBedClick.c - lines changed 1, context: html, text, full: html, text