2e704546ad7c7fe8f624328e3abb21b8048eeded
lrnassar
  Wed Sep 22 15:41:23 2021 -0700
Revert "Releasing the LRG update refs #24672"

This reverts commit 63bfb6e037471cc05850d31f55c5d2afade219e1.

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 71c6c4b..43625b2 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -99,31 +99,30 @@
 longLabel Locus Reference Genomic (LRG) Sequences Mapped to $date Assembly
 group map
 visibility hide
 type bigBed 12 +
 noScoreFilter .
 urlLabel Link to LRG report: 
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml
 urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"
 baseColorDefault diffBases
 baseColorUseSequence lrg
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 color 72,167,38
 searchIndex name
-pennantIcon Updated red ../goldenPath/newsarch.html#092121 "Updated September 21, 2021"
 
 track gad
 shortLabel GAD View
 longLabel Genetic Association Studies of Complex Diseases and Disorders
 group phenDis
 visibility hide
 color 200,0,0
 type bed 4
 url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=
 
 track decipher
 shortLabel Decipher CNVs
 longLabel Decipher CNVs
 group phenDis
 visibility hide
@@ -3144,31 +3143,54 @@
 altColor 127,127,127
 baseColorDefault genomicCodons
 baseColorUseSequence lfExtra
 indelDoubleInsert on
 indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor
 bigDataUrl /gbdb/$D/bbi/lrgBigPsl.bb
 searchIndex name
-pennantIcon Updated red ../goldenPath/newsarch.html#092121 "Updated September 21, 2021"
+release alpha
+
+track lrgTranscriptAli
+shortLabel LRG Transcripts
+longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
+group genes
+visibility hide
+type psl .
+cdsTable lrgCds
+cdnaTable lrgCdna
+pepTable lrgPep
+baseColorDefault diffCodons
+baseColorUseCds table lrgCds
+baseColorUseSequence table lrgCdna
+indelDoubleInsert on
+indelQueryInsert on
+showDiffBasesAllScales .
+showDiffBasesMaxZoom 10000.0
+showCdsAllScales .
+showCdsMaxZoom 10000.0
+color 54,125,29
+urlLabel Link to LRG transcript:
+url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
+release beta,public
 
 track affyHuEx1
 shortLabel Affy HuEx 1.0
 longLabel Affymetrix Human Exon 1.0 Probe Sets
 group expression
 visibility hide
 url http://www.affymetrix.com/analysis/netaffx/exon/probe_set.affx?pk=1:$$
 urlLabel Netaffx Link:
 useScore 1
 type bed 6 .
 
 track affyHumanExon
 shortLabel Affy All Exon
 longLabel Affymetrix All Exon Chips
 group expression