63bfb6e037471cc05850d31f55c5d2afade219e1
lrnassar
  Mon Sep 20 16:12:30 2021 -0700
Releasing the LRG update refs #24672

diff --git src/hg/makeDb/trackDb/human/trackDb.ra src/hg/makeDb/trackDb/human/trackDb.ra
index 43625b2..71c6c4b 100644
--- src/hg/makeDb/trackDb/human/trackDb.ra
+++ src/hg/makeDb/trackDb/human/trackDb.ra
@@ -99,30 +99,31 @@
 longLabel Locus Reference Genomic (LRG) Sequences Mapped to $date Assembly
 group map
 visibility hide
 type bigBed 12 +
 noScoreFilter .
 urlLabel Link to LRG report: 
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml
 urls hgncId="https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:$$" ncbiAcc="https://www.ncbi.nlm.nih.gov/nuccore/$$"
 baseColorDefault diffBases
 baseColorUseSequence lrg
 indelDoubleInsert on
 indelQueryInsert on
 showDiffBasesAllScales .
 color 72,167,38
 searchIndex name
+pennantIcon Updated red ../goldenPath/newsarch.html#092121 "Updated September 21, 2021"
 
 track gad
 shortLabel GAD View
 longLabel Genetic Association Studies of Complex Diseases and Disorders
 group phenDis
 visibility hide
 color 200,0,0
 type bed 4
 url http://geneticassociationdb.nih.gov/cgi-bin/tableview.cgi?table=allview&cond=gene=
 
 track decipher
 shortLabel Decipher CNVs
 longLabel Decipher CNVs
 group phenDis
 visibility hide
@@ -3143,54 +3144,31 @@
 altColor 127,127,127
 baseColorDefault genomicCodons
 baseColorUseSequence lfExtra
 indelDoubleInsert on
 indelPolyA on
 indelQueryInsert on
 showDiffBasesAllScales .
 showDiffBasesMaxZoom 10000.0
 showCdsAllScales .
 showCdsMaxZoom 10000.0
 color 54,125,29
 urlLabel Link to LRG transcript
 url http://ftp.ebi.ac.uk/pub/databases/lrgex/$<_lrgParent>.xml#transcripts_anchor
 bigDataUrl /gbdb/$D/bbi/lrgBigPsl.bb
 searchIndex name
-release alpha
-
-track lrgTranscriptAli
-shortLabel LRG Transcripts
-longLabel Locus Reference Genomic (LRG) Fixed Transcript Annotations
-group genes
-visibility hide
-type psl .
-cdsTable lrgCds
-cdnaTable lrgCdna
-pepTable lrgPep
-baseColorDefault diffCodons
-baseColorUseCds table lrgCds
-baseColorUseSequence table lrgCdna
-indelDoubleInsert on
-indelQueryInsert on
-showDiffBasesAllScales .
-showDiffBasesMaxZoom 10000.0
-showCdsAllScales .
-showCdsMaxZoom 10000.0
-color 54,125,29
-urlLabel Link to LRG transcript:
-url http://ftp.ebi.ac.uk/pub/databases/lrgex/$$.xml#transcripts_anchor
-release beta,public
+pennantIcon Updated red ../goldenPath/newsarch.html#092121 "Updated September 21, 2021"
 
 track affyHuEx1
 shortLabel Affy HuEx 1.0
 longLabel Affymetrix Human Exon 1.0 Probe Sets
 group expression
 visibility hide
 url http://www.affymetrix.com/analysis/netaffx/exon/probe_set.affx?pk=1:$$
 urlLabel Netaffx Link:
 useScore 1
 type bed 6 .
 
 track affyHumanExon
 shortLabel Affy All Exon
 longLabel Affymetrix All Exon Chips
 group expression